MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:69.2 nTPM
HPA Brain:45.8 nTPM
GTEx:69.2 nTPM
FANTOM5:10.0 Scaled Tags Per Million
Pig:1.1 nTPM
Mouse:99.2 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.4
2219 Male, age 76, both hemispheres 42.8
2411 Female, age 72, unknown 39.8
2586 Male, age 75, left hemisphere 34.2
2666 Male, age 74, left hemisphere 33.3
1827 Male, age 72, unknown 32.2
2828 Female, age 72, unknown 32.1
1870 Female, age 42, unknown 28.3
1833 Male, age 53, unknown 26.8
1830 Male, age 51, unknown 21.7
2019 Male, age 18, unknown 12.6
Dorsal raphe nucleus
nTPM: 45.8
2298 Female, age 72, unknown 58.7
2047 Male, age 72, unknown 57.2
2750 Male, age 76, both hemispheres 46.5
2016 Female, age 72, unknown 34.4
1828 Male, age 53, unknown 32.0
Inferior colliculus
nTPM: 26.8
1890 Male, age 53, unknown 29.3
2849 Male, age 72, unknown 29.3
1848 Female, age 42, unknown 27.0
2097 Female, age 72, unknown 21.7
Median raphe nucleus
nTPM: 41.6
2220 Male, age 76, midline 41.6
Periaquaductal grey, anterior
nTPM: 39.7
1795 Male, age 51, unknown 43.2
1947 Male, age 18, unknown 39.3
2502 Female, age 75, unknown 36.7
Periaquaductal grey, dorsal
nTPM: 43.0
1840 Male, age 53, unknown 61.4
2850 Male, age 76, both hemispheres 42.5
2464 Female, age 72, unknown 37.7
1831 Male, age 72, unknown 30.3
Periaquaductal grey, lateral
nTPM: 36.5
2053 Male, age 18, unknown 44.5
2140 Male, age 76, both hemispheres 38.1
2272 Male, age 74, both hemispheres 27.1
Pretectal area
nTPM: 28.1
2224 Female, age 72, unknown 45.9
2825 Male, age 18, unknown 38.9
2316 Male, age 76, right hemisphere 31.7
1944 Female, age 72, unknown 29.3
1817 Female, age 42, unknown 25.6
1816 Male, age 51, unknown 25.5
2273 Male, age 74, both hemispheres 24.5
1815 Male, age 53, unknown 23.9
2667 Female, age 75, unknown 23.8
2407 Male, age 75, both hemispheres 21.6
2007 Male, age 72, unknown 18.6
Red nucleus
nTPM: 21.6
2725 Female, age 75, unknown 29.4
2769 Male, age 72, unknown 23.6
1904 Male, age 53, unknown 23.4
2588 Male, age 74, left hemisphere 22.8
2227 Male, age 72, unknown 22.7
2503 Female, age 72, unknown 22.3
1954 Female, age 42, unknown 21.7
2823 Male, age 76, right hemisphere 21.1
1821 Female, age 72, unknown 19.6
1865 Male, age 51, unknown 19.2
2584 Male, age 75, left hemisphere 17.6
2785 Male, age 18, unknown 15.3
Substantia nigra
nTPM: 43.7
2699 Male, age 18, unknown 64.5
2665 Male, age 74, both hemispheres 58.6
1851 Male, age 51, unknown 51.0
1916 Female, age 42, unknown 48.7
2241 Male, age 72, unknown 45.4
2409 Female, age 72, unknown 40.5
2590 Female, age 75, unknown 38.8
1941 Male, age 53, unknown 35.7
1889 Female, age 72, unknown 31.0
2583 Male, age 75, right hemisphere 22.4
Superior colliculus
nTPM: 29.1
2261 Male, age 18, unknown 33.1
1796 Male, age 53, unknown 32.0
2087 Female, age 72, unknown 31.6
2664 Male, age 75, both hemispheres 31.5
2587 Male, age 74, left hemisphere 29.0
1995 Male, age 72, unknown 28.9
2668 Female, age 75, unknown 28.1
1913 Female, age 42, unknown 26.2
1839 Male, age 51, unknown 25.7
1895 Male, age 76, right hemisphere 24.7
Ventral tegmental area
nTPM: 40.4
1942 Male, age 51, unknown 53.3
2021 Male, age 53, unknown 40.7
2218 Male, age 76, both hemispheres 40.7
2410 Female, age 72, unknown 37.6
1915 Female, age 42, unknown 37.5
2223 Female, age 72, unknown 32.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 69.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.2
Samples: 183

Max nTPM: 303.4
Min nTPM: 5.5
Std nTPM: 47.5
Median nTPM: 59.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 303.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 268.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 257.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 254.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 225.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 211.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 181.1
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 169.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 165.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 139.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 136.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 10.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.0
FF:10158-103A5 76 years, female 10.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.8
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.3
Sample A Female 1.2
Sample B Female 0.6
Sample C Male 0.9
Sample D Male 0.3
Midbrain
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.8
Sample C Male 0.5
Sample D Male 0.3
Periaqueductal gray
nTPM: 1.1
Samples: 3

Max nTPM: 1.4
Min nTPM: 0.8
Sample B Female 0.8
Sample C Male 1.4
Sample D Male 1.0
Superior colliculi
nTPM: 0.3
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.1
Sample A Female 0.8
Sample B Female 0.1
Sample C Male 0.2
Sample D Male 0.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 99.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 99.2
Samples: 4

Max nTPM: 106.5
Min nTPM: 90.3
Sample A Male 105.0
Sample B Male 95.1
Sample C Female 90.3
Sample D Female 106.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
112648182 Antisense, RP_080912_05_A07, Mouse strain C57BL/6J (56 days, male) 0.9
1475 Antisense, RP_Baylor_103226, Mouse strain C57BL/6J (56 days, male) 0.1

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