MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:130.2 nTPM
HPA Brain:318.7 nTPM
GTEx:130.2 nTPM
FANTOM5:30.7 Scaled Tags Per Million
Pig:722.3 nTPM
Mouse:512.3 nTPM
Allen mouse:22.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 318.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 206.7
2666 Male, age 74, left hemisphere 305.6
2219 Male, age 76, both hemispheres 301.5
2019 Male, age 18, unknown 220.9
1827 Male, age 72, unknown 218.8
2411 Female, age 72, unknown 212.5
2828 Female, age 72, unknown 207.1
1870 Female, age 42, unknown 158.5
1833 Male, age 53, unknown 154.8
2586 Male, age 75, left hemisphere 147.9
1830 Male, age 51, unknown 139.6
Dorsal raphe nucleus
nTPM: 231.9
2298 Female, age 72, unknown 302.0
2047 Male, age 72, unknown 259.2
2750 Male, age 76, both hemispheres 241.9
1828 Male, age 53, unknown 231.4
2016 Female, age 72, unknown 125.0
Inferior colliculus
nTPM: 207.6
2097 Female, age 72, unknown 267.1
1848 Female, age 42, unknown 209.2
1890 Male, age 53, unknown 185.7
2849 Male, age 72, unknown 168.2
Median raphe nucleus
nTPM: 318.7
2220 Male, age 76, midline 318.7
Periaquaductal grey, anterior
nTPM: 229.4
1795 Male, age 51, unknown 250.4
2502 Female, age 75, unknown 228.6
1947 Male, age 18, unknown 209.3
Periaquaductal grey, dorsal
nTPM: 153.5
1831 Male, age 72, unknown 166.6
1840 Male, age 53, unknown 160.3
2850 Male, age 76, both hemispheres 146.3
2464 Female, age 72, unknown 140.8
Periaquaductal grey, lateral
nTPM: 127.7
2053 Male, age 18, unknown 131.8
2272 Male, age 74, both hemispheres 125.6
2140 Male, age 76, both hemispheres 125.5
Pretectal area
nTPM: 245.6
2667 Female, age 75, unknown 439.1
2007 Male, age 72, unknown 347.1
1944 Female, age 72, unknown 345.6
1817 Female, age 42, unknown 328.1
1816 Male, age 51, unknown 320.1
1815 Male, age 53, unknown 236.1
2224 Female, age 72, unknown 223.8
2825 Male, age 18, unknown 147.8
2316 Male, age 76, right hemisphere 127.3
2273 Male, age 74, both hemispheres 96.0
2407 Male, age 75, both hemispheres 90.7
Red nucleus
nTPM: 156.8
2785 Male, age 18, unknown 218.3
1821 Female, age 72, unknown 192.0
2584 Male, age 75, left hemisphere 180.5
1954 Female, age 42, unknown 175.8
2769 Male, age 72, unknown 166.5
2227 Male, age 72, unknown 163.6
2823 Male, age 76, right hemisphere 161.6
2503 Female, age 72, unknown 148.5
1904 Male, age 53, unknown 138.8
1865 Male, age 51, unknown 137.6
2588 Male, age 74, left hemisphere 130.8
2725 Female, age 75, unknown 67.4
Substantia nigra
nTPM: 241.3
1916 Female, age 42, unknown 426.2
1941 Male, age 53, unknown 338.8
2665 Male, age 74, both hemispheres 302.7
1889 Female, age 72, unknown 297.7
1851 Male, age 51, unknown 269.0
2409 Female, age 72, unknown 208.8
2699 Male, age 18, unknown 181.2
2241 Male, age 72, unknown 155.1
2583 Male, age 75, right hemisphere 130.6
2590 Female, age 75, unknown 102.6
Superior colliculus
nTPM: 198.2
2668 Female, age 75, unknown 423.6
2087 Female, age 72, unknown 275.1
1796 Male, age 53, unknown 228.8
1895 Male, age 76, right hemisphere 215.5
2261 Male, age 18, unknown 211.5
1839 Male, age 51, unknown 164.5
1913 Female, age 42, unknown 147.1
1995 Male, age 72, unknown 116.8
2587 Male, age 74, left hemisphere 112.5
2664 Male, age 75, both hemispheres 86.1
Ventral tegmental area
nTPM: 252.9
2218 Male, age 76, both hemispheres 373.1
2410 Female, age 72, unknown 304.7
1915 Female, age 42, unknown 292.6
1942 Male, age 51, unknown 209.2
2223 Female, age 72, unknown 177.6
2021 Male, age 53, unknown 160.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 130.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 130.2
Samples: 183

Max nTPM: 587.2
Min nTPM: 9.2
Std nTPM: 103.5
Median nTPM: 101.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 587.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 411.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 385.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 382.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 374.8
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 366.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 343.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 341.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 325.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 322.3
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 321.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.7
FF:10158-103A5 76 years, female 30.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 722.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 464.3
Samples: 4

Max nTPM: 757.2
Min nTPM: 160.2
Sample A Female 757.2
Sample B Female 296.8
Sample C Male 643.0
Sample D Male 160.2
Midbrain
nTPM: 571.8
Samples: 4

Max nTPM: 1063.5
Min nTPM: 181.8
Sample A Female 181.8
Sample B Female 389.8
Sample C Male 1063.5
Sample D Male 651.9
Periaqueductal gray
nTPM: 333.9
Samples: 3

Max nTPM: 437.7
Min nTPM: 235.4
Sample B Female 328.5
Sample C Male 437.7
Sample D Male 235.4
Superior colliculi
nTPM: 722.3
Samples: 4

Max nTPM: 1069.6
Min nTPM: 412.4
Sample A Female 769.4
Sample B Female 412.4
Sample C Male 1069.6
Sample D Male 637.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 512.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 512.3
Samples: 4

Max nTPM: 532.5
Min nTPM: 490.1
Sample A Male 532.5
Sample B Male 490.1
Sample C Female 505.2
Sample D Female 521.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 22.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.6
79544840 Antisense, RP_071101_01_A04, Mouse strain C57BL/6J (56 days, male) 22.6

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