A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.5
nTPM
Monaco:
25.5
nTPM
Schmiedel:
12.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.5
HPA sample
nTPM
NK-cell nTPM: 7.6
Samples: 6
Max nTPM: 10.0
Min nTPM: 2.4
P10809_1013
7.8
P10809_1033
7.3
P10809_1052
10.0
P10809_1071
9.3
P10809_1093
2.4
P10809_1103
8.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.5
Monaco sample
nTPM
NK-cell nTPM: 25.5
Samples: 4
Max nTPM: 33.6
Min nTPM: 20.0
RHH5316_R3683
25.2
RHH5224_R3596
33.6
RHH5253_R3625
20.0
RHH5282_R3654
23.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.5
Schmiedel sample id
TPM
NK-cell TPM: 12.5
Samples: 90
Max TPM: 17.5
Min TPM: 6.3
NK_1
17.5
NK_2
17.4
NK_3
16.5
NK_4
15.9
NK_5
15.9
NK_6
15.5
NK_7
15.4
NK_8
15.0
NK_9
14.8
NK_10
14.6
NK_11
14.6
NK_12
14.6
NK_13
14.5
NK_14
14.4
NK_15
14.4
NK_16
14.4
NK_17
14.3
NK_18
14.2
NK_19
14.0
NK_20
14.0
NK_21
13.9
NK_22
13.9
NK_23
13.9
NK_24
13.8
NK_25
13.7
NK_26
13.6
NK_27
13.6
NK_28
13.5
NK_29
13.5
NK_30
13.5
NK_31
13.4
NK_32
13.4
NK_33
13.4
NK_34
13.3
NK_35
13.3
NK_36
13.2
NK_37
13.2
NK_38
13.1
NK_39
13.0
NK_40
12.9
NK_41
12.8
NK_42
12.8
NK_43
12.8
NK_44
12.7
NK_45
12.5
NK_46
12.5
NK_47
12.5
NK_48
12.4
NK_49
12.4
NK_50
12.3
NK_51
12.2
NK_52
12.2
NK_53
12.1
NK_54
12.0
NK_55
12.0
NK_56
11.9
NK_57
11.9
NK_58
11.9
NK_59
11.8
NK_60
11.7
NK_61
11.6
NK_62
11.6
NK_63
11.5
NK_64
11.5
NK_65
11.4
NK_66
11.3
NK_67
11.3
NK_68
11.1
NK_69
11.0
NK_70
10.9
NK_71
10.9
NK_72
10.9
NK_73
10.8
NK_74
10.8
NK_75
10.5
NK_76
10.5
NK_77
10.4
NK_78
10.4
NK_79
10.4
NK_80
10.4
NK_81
10.3
NK_82
10.2
NK_83
10.1
NK_84
9.3
NK_85
9.3
NK_86
9.0
NK_87
9.0
NK_88
8.8
NK_89
8.5
NK_90
6.3
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