A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.5
nTPM
Monaco:
159.6
nTPM
Schmiedel:
58.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.5
HPA sample
nTPM
Classical monocyte nTPM: 23.5
Samples: 6
Max nTPM: 25.7
Min nTPM: 20.1
P10809_1003
24.4
P10809_1020
20.1
P10809_1039
25.7
P10809_1058
21.6
P10809_1080
25.2
P10809_1107
24.1
Intermediate monocyte nTPM: 8.5
Samples: 6
Max nTPM: 13.4
Min nTPM: 4.1
P10809_1004
7.9
P10809_1023
4.1
P10809_1042
9.6
P10809_1061
13.4
P10809_1081
7.0
P10809_1108
9.3
Non-classical monocyte nTPM: 12.8
Samples: 5
Max nTPM: 29.8
Min nTPM: 8.0
P10809_1005
9.4
P10809_1053
8.7
P10809_1072
29.8
P10809_1082
8.0
P10809_1109
8.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
159.6
Monaco sample
nTPM
Classical monocyte nTPM: 159.6
Samples: 4
Max nTPM: 177.0
Min nTPM: 133.8
RHH5313_R3680
163.6
RHH5221_R3593
133.8
RHH5250_R3622
177.0
RHH5279_R3651
164.2
Intermediate monocyte nTPM: 55.0
Samples: 4
Max nTPM: 66.0
Min nTPM: 36.6
RHH5314_R3681
66.0
RHH5222_R3594
36.6
RHH5251_R3623
63.6
RHH5280_R3652
53.7
Non-classical monocyte nTPM: 67.0
Samples: 4
Max nTPM: 77.7
Min nTPM: 44.0
RHH5315_R3682
76.8
RHH5223_R3595
44.0
RHH5252_R3624
77.7
RHH5281_R3653
69.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.0
Schmiedel sample id
TPM
Classical monocyte TPM: 58.0
Samples: 91
Max TPM: 81.0
Min TPM: 38.9
MONOCYTES_1
81.0
MONOCYTES_2
79.5
MONOCYTES_3
73.2
MONOCYTES_4
72.8
MONOCYTES_5
72.4
MONOCYTES_6
71.9
MONOCYTES_7
71.4
MONOCYTES_8
70.9
MONOCYTES_9
70.0
MONOCYTES_10
69.7
MONOCYTES_11
69.0
MONOCYTES_12
68.2
MONOCYTES_13
68.2
MONOCYTES_14
68.1
MONOCYTES_15
68.1
MONOCYTES_16
67.9
MONOCYTES_17
67.7
MONOCYTES_18
66.2
MONOCYTES_19
65.9
MONOCYTES_20
65.7
MONOCYTES_21
65.5
MONOCYTES_22
64.8
MONOCYTES_23
63.7
MONOCYTES_24
63.6
MONOCYTES_25
63.2
MONOCYTES_26
63.2
MONOCYTES_27
62.9
MONOCYTES_28
62.5
MONOCYTES_29
62.4
MONOCYTES_30
62.4
MONOCYTES_31
62.1
MONOCYTES_32
62.1
MONOCYTES_33
61.9
MONOCYTES_34
61.8
MONOCYTES_35
61.8
MONOCYTES_36
61.5
MONOCYTES_37
61.5
MONOCYTES_38
61.4
MONOCYTES_39
61.1
MONOCYTES_40
61.0
MONOCYTES_41
60.8
MONOCYTES_42
60.8
MONOCYTES_43
59.8
MONOCYTES_44
59.7
MONOCYTES_45
59.4
MONOCYTES_46
59.4
MONOCYTES_47
59.3
MONOCYTES_48
58.5
MONOCYTES_49
57.8
MONOCYTES_50
57.7
MONOCYTES_51
57.1
MONOCYTES_52
56.8
MONOCYTES_53
55.6
MONOCYTES_54
55.4
MONOCYTES_55
55.1
MONOCYTES_56
54.8
MONOCYTES_57
54.3
MONOCYTES_58
53.6
MONOCYTES_59
53.5
MONOCYTES_60
53.4
MONOCYTES_61
53.3
MONOCYTES_62
53.2
MONOCYTES_63
53.0
MONOCYTES_64
52.7
MONOCYTES_65
51.5
MONOCYTES_66
51.3
MONOCYTES_67
50.8
MONOCYTES_68
50.7
MONOCYTES_69
50.6
MONOCYTES_70
50.4
MONOCYTES_71
49.7
MONOCYTES_72
49.4
MONOCYTES_73
49.2
MONOCYTES_74
49.0
MONOCYTES_75
48.1
MONOCYTES_76
47.7
MONOCYTES_77
47.5
MONOCYTES_78
47.4
MONOCYTES_79
47.4
MONOCYTES_80
47.3
MONOCYTES_81
46.9
MONOCYTES_82
46.7
MONOCYTES_83
46.3
MONOCYTES_84
46.1
MONOCYTES_85
43.7
MONOCYTES_86
42.4
MONOCYTES_87
42.2
MONOCYTES_88
42.0
MONOCYTES_89
41.0
MONOCYTES_90
39.4
MONOCYTES_91
38.9
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Non-classical monocyte TPM: 26.0
Samples: 90
Max TPM: 33.4
Min TPM: 18.3
M2_1
33.4
M2_2
33.0
M2_3
31.3
M2_4
31.1
M2_5
31.0
M2_6
30.7
M2_7
30.6
M2_8
30.5
M2_9
30.5
M2_10
30.1
M2_11
30.0
M2_12
30.0
M2_13
29.6
M2_14
29.3
M2_15
29.2
M2_16
29.1
M2_17
29.1
M2_18
29.1
M2_19
29.1
M2_20
29.1
M2_21
28.9
M2_22
28.8
M2_23
28.5
M2_24
28.0
M2_25
27.9
M2_26
27.8
M2_27
27.6
M2_28
27.5
M2_29
27.5
M2_30
27.2
M2_31
27.2
M2_32
27.1
M2_33
26.9
M2_34
26.9
M2_35
26.8
M2_36
26.8
M2_37
26.3
M2_38
26.2
M2_39
26.2
M2_40
25.9
M2_41
25.9
M2_42
25.8
M2_43
25.7
M2_44
25.6
M2_45
25.5
M2_46
25.5
M2_47
25.4
M2_48
25.4
M2_49
25.4
M2_50
25.3
M2_51
25.3
M2_52
25.2
M2_53
25.2
M2_54
25.1
M2_55
25.1
M2_56
25.1
M2_57
24.9
M2_58
24.9
M2_59
24.9
M2_60
24.8
M2_61
24.8
M2_62
24.8
M2_63
24.7
M2_64
24.7
M2_65
24.6
M2_66
24.5
M2_67
24.3
M2_68
24.2
M2_69
24.0
M2_70
23.9
M2_71
23.8
M2_72
23.6
M2_73
23.5
M2_74
23.5
M2_75
23.3
M2_76
23.2
M2_77
22.9
M2_78
22.8
M2_79
22.5
M2_80
22.1
M2_81
22.1
M2_82
21.8
M2_83
21.1
M2_84
20.4
M2_85
20.2
M2_86
19.7
M2_87
19.7
M2_88
19.5
M2_89
19.3
M2_90
18.3
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