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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • IMMUNE

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  • RASSF2
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:24.3 nTPM
Monaco:152.4 nTPM
Schmiedel:160.2 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

24.3
HPA sample nTPM
Memory B-cell
nTPM: 24.3
Samples: 6

Max nTPM: 34.1
Min nTPM: 2.3
P10809_1017 30.8
P10809_1025 34.1
P10809_1044 2.3
P10809_1063 25.3
P10809_1092 23.9
P10809_1105 29.3
Naive B-cell
nTPM: 16.4
Samples: 6

Max nTPM: 19.3
Min nTPM: 13.3
P10809_1011 19.3
P10809_1029 19.0
P10809_1048 17.3
P10809_1067 13.6
P10809_1091 13.3
P10809_1104 15.8

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

152.4
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 131.9
Samples: 4

Max nTPM: 154.2
Min nTPM: 104.1
RHH5310_R3677 140.5
RHH5218_R3590 128.8
RHH5247_R3619 154.2
RHH5276_R3648 104.1
Naive B-cell
nTPM: 121.8
Samples: 4

Max nTPM: 173.8
Min nTPM: 90.8
RHH5308_R3675 94.0
RHH5216_R3588 128.5
RHH5245_R3617 173.8
RHH5274_R3646 90.8
Non-switched memory B-cell
nTPM: 152.4
Samples: 4

Max nTPM: 165.5
Min nTPM: 128.6
RHH5309_R3676 150.9
RHH5217_R3589 128.6
RHH5246_R3618 164.7
RHH5275_R3647 165.5
Plasmablast
nTPM: 42.3
Samples: 4

Max nTPM: 50.4
Min nTPM: 35.7
RHH5312_R3679 42.5
RHH5220_R3592 40.5
RHH5249_R3621 35.7
RHH5278_R3650 50.4
Switched memory B-cell
nTPM: 142.5
Samples: 4

Max nTPM: 186.5
Min nTPM: 126.2
RHH5311_R3678 128.7
RHH5219_R3591 126.2
RHH5248_R3620 186.5
RHH5277_R3649 128.5

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

160.2
Schmiedel sample id TPM
Naive B-cell
TPM: 160.2
Samples: 91

Max TPM: 208.3
Min TPM: 124.3
B_CELL_NAIVE_1 208.3
B_CELL_NAIVE_2 204.8
B_CELL_NAIVE_3 203.3
B_CELL_NAIVE_4 192.0
B_CELL_NAIVE_5 190.8
B_CELL_NAIVE_6 189.0
B_CELL_NAIVE_7 184.9
B_CELL_NAIVE_8 183.2
B_CELL_NAIVE_9 181.8
B_CELL_NAIVE_10 181.5
B_CELL_NAIVE_11 178.3
B_CELL_NAIVE_12 176.1
B_CELL_NAIVE_13 175.5
B_CELL_NAIVE_14 174.9
B_CELL_NAIVE_15 174.7
B_CELL_NAIVE_16 174.2
B_CELL_NAIVE_17 174.0
B_CELL_NAIVE_18 173.9
B_CELL_NAIVE_19 173.7
B_CELL_NAIVE_20 173.0
B_CELL_NAIVE_21 172.4
B_CELL_NAIVE_22 171.8
B_CELL_NAIVE_23 171.1
B_CELL_NAIVE_24 170.6
B_CELL_NAIVE_25 170.4
B_CELL_NAIVE_26 170.3
B_CELL_NAIVE_27 169.9
B_CELL_NAIVE_28 169.5
B_CELL_NAIVE_29 169.3
B_CELL_NAIVE_30 168.7
B_CELL_NAIVE_31 168.2
B_CELL_NAIVE_32 167.1
B_CELL_NAIVE_33 166.6
B_CELL_NAIVE_34 165.4
B_CELL_NAIVE_35 164.9
B_CELL_NAIVE_36 164.6
B_CELL_NAIVE_37 164.3
B_CELL_NAIVE_38 164.2
B_CELL_NAIVE_39 162.2
B_CELL_NAIVE_40 162.1
B_CELL_NAIVE_41 161.4
B_CELL_NAIVE_42 161.0
B_CELL_NAIVE_43 160.8
B_CELL_NAIVE_44 160.8
B_CELL_NAIVE_45 160.6
B_CELL_NAIVE_46 160.6
B_CELL_NAIVE_47 160.5
B_CELL_NAIVE_48 160.3
B_CELL_NAIVE_49 159.2
B_CELL_NAIVE_50 158.8
B_CELL_NAIVE_51 158.0
B_CELL_NAIVE_52 157.3
B_CELL_NAIVE_53 156.0
B_CELL_NAIVE_54 154.5
B_CELL_NAIVE_55 154.0
B_CELL_NAIVE_56 154.0
B_CELL_NAIVE_57 153.6
B_CELL_NAIVE_58 151.5
B_CELL_NAIVE_59 151.3
B_CELL_NAIVE_60 151.1
B_CELL_NAIVE_61 151.0
B_CELL_NAIVE_62 150.8
B_CELL_NAIVE_63 150.3
B_CELL_NAIVE_64 149.4
B_CELL_NAIVE_65 149.4
B_CELL_NAIVE_66 148.8
B_CELL_NAIVE_67 147.8
B_CELL_NAIVE_68 147.6
B_CELL_NAIVE_69 147.4
B_CELL_NAIVE_70 147.0
B_CELL_NAIVE_71 146.9
B_CELL_NAIVE_72 146.7
B_CELL_NAIVE_73 145.8
B_CELL_NAIVE_74 145.2
B_CELL_NAIVE_75 145.1
B_CELL_NAIVE_76 144.3
B_CELL_NAIVE_77 143.7
B_CELL_NAIVE_78 143.6
B_CELL_NAIVE_79 140.7
B_CELL_NAIVE_80 139.5
B_CELL_NAIVE_81 139.3
B_CELL_NAIVE_82 138.4
B_CELL_NAIVE_83 137.9
B_CELL_NAIVE_84 137.7
B_CELL_NAIVE_85 137.1
B_CELL_NAIVE_86 137.0
B_CELL_NAIVE_87 135.8
B_CELL_NAIVE_88 134.5
B_CELL_NAIVE_89 133.6
B_CELL_NAIVE_90 128.5
B_CELL_NAIVE_91 124.3
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