A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
24.3
nTPM
Monaco:
152.4
nTPM
Schmiedel:
160.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.3
HPA sample
nTPM
Memory B-cell nTPM: 24.3
Samples: 6
Max nTPM: 34.1
Min nTPM: 2.3
P10809_1017
30.8
P10809_1025
34.1
P10809_1044
2.3
P10809_1063
25.3
P10809_1092
23.9
P10809_1105
29.3
Naive B-cell nTPM: 16.4
Samples: 6
Max nTPM: 19.3
Min nTPM: 13.3
P10809_1011
19.3
P10809_1029
19.0
P10809_1048
17.3
P10809_1067
13.6
P10809_1091
13.3
P10809_1104
15.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
152.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 131.9
Samples: 4
Max nTPM: 154.2
Min nTPM: 104.1
RHH5310_R3677
140.5
RHH5218_R3590
128.8
RHH5247_R3619
154.2
RHH5276_R3648
104.1
Naive B-cell nTPM: 121.8
Samples: 4
Max nTPM: 173.8
Min nTPM: 90.8
RHH5308_R3675
94.0
RHH5216_R3588
128.5
RHH5245_R3617
173.8
RHH5274_R3646
90.8
Non-switched memory B-cell nTPM: 152.4
Samples: 4
Max nTPM: 165.5
Min nTPM: 128.6
RHH5309_R3676
150.9
RHH5217_R3589
128.6
RHH5246_R3618
164.7
RHH5275_R3647
165.5
Plasmablast nTPM: 42.3
Samples: 4
Max nTPM: 50.4
Min nTPM: 35.7
RHH5312_R3679
42.5
RHH5220_R3592
40.5
RHH5249_R3621
35.7
RHH5278_R3650
50.4
Switched memory B-cell nTPM: 142.5
Samples: 4
Max nTPM: 186.5
Min nTPM: 126.2
RHH5311_R3678
128.7
RHH5219_R3591
126.2
RHH5248_R3620
186.5
RHH5277_R3649
128.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
160.2
Schmiedel sample id
TPM
Naive B-cell TPM: 160.2
Samples: 91
Max TPM: 208.3
Min TPM: 124.3
B_CELL_NAIVE_1
208.3
B_CELL_NAIVE_2
204.8
B_CELL_NAIVE_3
203.3
B_CELL_NAIVE_4
192.0
B_CELL_NAIVE_5
190.8
B_CELL_NAIVE_6
189.0
B_CELL_NAIVE_7
184.9
B_CELL_NAIVE_8
183.2
B_CELL_NAIVE_9
181.8
B_CELL_NAIVE_10
181.5
B_CELL_NAIVE_11
178.3
B_CELL_NAIVE_12
176.1
B_CELL_NAIVE_13
175.5
B_CELL_NAIVE_14
174.9
B_CELL_NAIVE_15
174.7
B_CELL_NAIVE_16
174.2
B_CELL_NAIVE_17
174.0
B_CELL_NAIVE_18
173.9
B_CELL_NAIVE_19
173.7
B_CELL_NAIVE_20
173.0
B_CELL_NAIVE_21
172.4
B_CELL_NAIVE_22
171.8
B_CELL_NAIVE_23
171.1
B_CELL_NAIVE_24
170.6
B_CELL_NAIVE_25
170.4
B_CELL_NAIVE_26
170.3
B_CELL_NAIVE_27
169.9
B_CELL_NAIVE_28
169.5
B_CELL_NAIVE_29
169.3
B_CELL_NAIVE_30
168.7
B_CELL_NAIVE_31
168.2
B_CELL_NAIVE_32
167.1
B_CELL_NAIVE_33
166.6
B_CELL_NAIVE_34
165.4
B_CELL_NAIVE_35
164.9
B_CELL_NAIVE_36
164.6
B_CELL_NAIVE_37
164.3
B_CELL_NAIVE_38
164.2
B_CELL_NAIVE_39
162.2
B_CELL_NAIVE_40
162.1
B_CELL_NAIVE_41
161.4
B_CELL_NAIVE_42
161.0
B_CELL_NAIVE_43
160.8
B_CELL_NAIVE_44
160.8
B_CELL_NAIVE_45
160.6
B_CELL_NAIVE_46
160.6
B_CELL_NAIVE_47
160.5
B_CELL_NAIVE_48
160.3
B_CELL_NAIVE_49
159.2
B_CELL_NAIVE_50
158.8
B_CELL_NAIVE_51
158.0
B_CELL_NAIVE_52
157.3
B_CELL_NAIVE_53
156.0
B_CELL_NAIVE_54
154.5
B_CELL_NAIVE_55
154.0
B_CELL_NAIVE_56
154.0
B_CELL_NAIVE_57
153.6
B_CELL_NAIVE_58
151.5
B_CELL_NAIVE_59
151.3
B_CELL_NAIVE_60
151.1
B_CELL_NAIVE_61
151.0
B_CELL_NAIVE_62
150.8
B_CELL_NAIVE_63
150.3
B_CELL_NAIVE_64
149.4
B_CELL_NAIVE_65
149.4
B_CELL_NAIVE_66
148.8
B_CELL_NAIVE_67
147.8
B_CELL_NAIVE_68
147.6
B_CELL_NAIVE_69
147.4
B_CELL_NAIVE_70
147.0
B_CELL_NAIVE_71
146.9
B_CELL_NAIVE_72
146.7
B_CELL_NAIVE_73
145.8
B_CELL_NAIVE_74
145.2
B_CELL_NAIVE_75
145.1
B_CELL_NAIVE_76
144.3
B_CELL_NAIVE_77
143.7
B_CELL_NAIVE_78
143.6
B_CELL_NAIVE_79
140.7
B_CELL_NAIVE_80
139.5
B_CELL_NAIVE_81
139.3
B_CELL_NAIVE_82
138.4
B_CELL_NAIVE_83
137.9
B_CELL_NAIVE_84
137.7
B_CELL_NAIVE_85
137.1
B_CELL_NAIVE_86
137.0
B_CELL_NAIVE_87
135.8
B_CELL_NAIVE_88
134.5
B_CELL_NAIVE_89
133.6
B_CELL_NAIVE_90
128.5
B_CELL_NAIVE_91
124.3
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