A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
61.5
nTPM
Monaco:
349.5
nTPM
Schmiedel:
371.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.5
HPA sample
nTPM
Classical monocyte nTPM: 61.5
Samples: 6
Max nTPM: 104.5
Min nTPM: 45.5
P10809_1003
104.5
P10809_1020
64.4
P10809_1039
45.5
P10809_1058
51.9
P10809_1080
56.0
P10809_1107
46.5
Intermediate monocyte nTPM: 50.0
Samples: 6
Max nTPM: 69.9
Min nTPM: 31.1
P10809_1004
69.9
P10809_1023
40.8
P10809_1042
55.6
P10809_1061
67.8
P10809_1081
34.9
P10809_1108
31.1
Non-classical monocyte nTPM: 60.1
Samples: 5
Max nTPM: 87.7
Min nTPM: 27.8
P10809_1005
75.6
P10809_1053
66.9
P10809_1072
87.7
P10809_1082
27.8
P10809_1109
42.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
349.5
Monaco sample
nTPM
Classical monocyte nTPM: 349.5
Samples: 4
Max nTPM: 371.8
Min nTPM: 321.4
RHH5313_R3680
358.7
RHH5221_R3593
346.3
RHH5250_R3622
371.8
RHH5279_R3651
321.4
Intermediate monocyte nTPM: 208.1
Samples: 4
Max nTPM: 242.3
Min nTPM: 190.8
RHH5314_R3681
242.3
RHH5222_R3594
198.3
RHH5251_R3623
190.8
RHH5280_R3652
200.9
Non-classical monocyte nTPM: 233.4
Samples: 4
Max nTPM: 275.1
Min nTPM: 167.3
RHH5315_R3682
275.1
RHH5223_R3595
167.3
RHH5252_R3624
248.9
RHH5281_R3653
242.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
371.3
Schmiedel sample id
TPM
Classical monocyte TPM: 371.3
Samples: 91
Max TPM: 459.9
Min TPM: 252.1
MONOCYTES_1
459.9
MONOCYTES_2
446.2
MONOCYTES_3
445.5
MONOCYTES_4
441.8
MONOCYTES_5
438.7
MONOCYTES_6
435.4
MONOCYTES_7
434.8
MONOCYTES_8
434.7
MONOCYTES_9
428.2
MONOCYTES_10
427.1
MONOCYTES_11
424.3
MONOCYTES_12
424.1
MONOCYTES_13
423.0
MONOCYTES_14
420.2
MONOCYTES_15
417.9
MONOCYTES_16
415.3
MONOCYTES_17
410.2
MONOCYTES_18
408.5
MONOCYTES_19
407.9
MONOCYTES_20
406.5
MONOCYTES_21
399.9
MONOCYTES_22
398.6
MONOCYTES_23
397.6
MONOCYTES_24
397.1
MONOCYTES_25
395.1
MONOCYTES_26
392.4
MONOCYTES_27
391.1
MONOCYTES_28
390.7
MONOCYTES_29
390.3
MONOCYTES_30
388.8
MONOCYTES_31
388.4
MONOCYTES_32
387.2
MONOCYTES_33
384.5
MONOCYTES_34
384.2
MONOCYTES_35
384.1
MONOCYTES_36
383.7
MONOCYTES_37
383.5
MONOCYTES_38
382.3
MONOCYTES_39
382.0
MONOCYTES_40
378.0
MONOCYTES_41
377.4
MONOCYTES_42
375.6
MONOCYTES_43
375.2
MONOCYTES_44
372.8
MONOCYTES_45
367.3
MONOCYTES_46
366.2
MONOCYTES_47
364.6
MONOCYTES_48
363.5
MONOCYTES_49
362.6
MONOCYTES_50
361.6
MONOCYTES_51
359.5
MONOCYTES_52
359.1
MONOCYTES_53
358.8
MONOCYTES_54
358.4
MONOCYTES_55
357.5
MONOCYTES_56
354.8
MONOCYTES_57
353.7
MONOCYTES_58
353.0
MONOCYTES_59
352.2
MONOCYTES_60
351.8
MONOCYTES_61
350.5
MONOCYTES_62
348.8
MONOCYTES_63
347.6
MONOCYTES_64
346.5
MONOCYTES_65
346.4
MONOCYTES_66
346.1
MONOCYTES_67
345.5
MONOCYTES_68
344.3
MONOCYTES_69
343.9
MONOCYTES_70
343.8
MONOCYTES_71
343.7
MONOCYTES_72
342.1
MONOCYTES_73
341.9
MONOCYTES_74
341.0
MONOCYTES_75
341.0
MONOCYTES_76
338.7
MONOCYTES_77
337.1
MONOCYTES_78
336.7
MONOCYTES_79
333.5
MONOCYTES_80
330.5
MONOCYTES_81
329.1
MONOCYTES_82
328.9
MONOCYTES_83
327.2
MONOCYTES_84
323.6
MONOCYTES_85
318.8
MONOCYTES_86
316.1
MONOCYTES_87
308.1
MONOCYTES_88
298.9
MONOCYTES_89
285.1
MONOCYTES_90
277.1
MONOCYTES_91
252.1
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Non-classical monocyte TPM: 258.5
Samples: 90
Max TPM: 374.6
Min TPM: 165.9
M2_1
374.6
M2_2
353.6
M2_3
348.9
M2_4
329.4
M2_5
327.2
M2_6
326.9
M2_7
319.0
M2_8
316.4
M2_9
312.5
M2_10
311.1
M2_11
309.9
M2_12
309.7
M2_13
305.7
M2_14
305.0
M2_15
304.4
M2_16
299.8
M2_17
299.6
M2_18
298.9
M2_19
298.2
M2_20
297.8
M2_21
293.7
M2_22
292.3
M2_23
290.4
M2_24
285.9
M2_25
282.7
M2_26
282.6
M2_27
280.7
M2_28
279.2
M2_29
277.9
M2_30
277.3
M2_31
275.8
M2_32
269.4
M2_33
268.6
M2_34
268.4
M2_35
268.0
M2_36
267.5
M2_37
266.4
M2_38
265.0
M2_39
264.6
M2_40
263.4
M2_41
263.0
M2_42
261.8
M2_43
261.3
M2_44
260.3
M2_45
259.3
M2_46
258.5
M2_47
258.3
M2_48
258.1
M2_49
256.8
M2_50
255.8
M2_51
255.7
M2_52
255.6
M2_53
254.2
M2_54
252.2
M2_55
251.1
M2_56
249.2
M2_57
243.8
M2_58
243.7
M2_59
242.5
M2_60
240.6
M2_61
234.9
M2_62
234.4
M2_63
231.9
M2_64
229.0
M2_65
227.3
M2_66
225.5
M2_67
225.4
M2_68
223.7
M2_69
223.0
M2_70
221.9
M2_71
219.1
M2_72
218.6
M2_73
217.3
M2_74
214.3
M2_75
214.3
M2_76
214.2
M2_77
213.3
M2_78
211.8
M2_79
210.8
M2_80
206.7
M2_81
202.0
M2_82
201.2
M2_83
200.1
M2_84
198.3
M2_85
197.0
M2_86
194.9
M2_87
189.0
M2_88
185.0
M2_89
168.2
M2_90
165.9
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