MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.4 nTPM
HPA Brain:74.0 nTPM
GTEx:22.4 nTPM
FANTOM5:7.1 Scaled Tags Per Million
Pig:30.1 nTPM
Mouse:53.4 nTPM
Allen mouse:8.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 74.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.7
2828 Female, age 72, unknown 78.6
1827 Male, age 72, unknown 77.7
2586 Male, age 75, left hemisphere 77.7
2666 Male, age 74, left hemisphere 76.0
2019 Male, age 18, unknown 72.9
2219 Male, age 76, both hemispheres 52.7
2411 Female, age 72, unknown 52.6
1870 Female, age 42, unknown 44.2
1833 Male, age 53, unknown 42.7
1830 Male, age 51, unknown 41.9
Dorsal raphe nucleus
nTPM: 51.9
2298 Female, age 72, unknown 61.0
1828 Male, age 53, unknown 55.4
2047 Male, age 72, unknown 55.3
2750 Male, age 76, both hemispheres 49.6
2016 Female, age 72, unknown 38.0
Inferior colliculus
nTPM: 57.6
2097 Female, age 72, unknown 71.5
1890 Male, age 53, unknown 57.5
1848 Female, age 42, unknown 53.8
2849 Male, age 72, unknown 47.7
Median raphe nucleus
nTPM: 58.5
2220 Male, age 76, midline 58.5
Periaquaductal grey, anterior
nTPM: 74.0
1795 Male, age 51, unknown 90.2
2502 Female, age 75, unknown 69.3
1947 Male, age 18, unknown 62.6
Periaquaductal grey, dorsal
nTPM: 49.3
1831 Male, age 72, unknown 53.7
2464 Female, age 72, unknown 52.1
1840 Male, age 53, unknown 51.2
2850 Male, age 76, both hemispheres 40.1
Periaquaductal grey, lateral
nTPM: 43.2
2053 Male, age 18, unknown 47.4
2140 Male, age 76, both hemispheres 46.8
2272 Male, age 74, both hemispheres 35.5
Pretectal area
nTPM: 72.5
1816 Male, age 51, unknown 121.3
1944 Female, age 72, unknown 106.7
2007 Male, age 72, unknown 102.6
1817 Female, age 42, unknown 93.4
1815 Male, age 53, unknown 79.0
2667 Female, age 75, unknown 68.3
2224 Female, age 72, unknown 52.1
2825 Male, age 18, unknown 48.0
2316 Male, age 76, right hemisphere 45.1
2407 Male, age 75, both hemispheres 44.1
2273 Male, age 74, both hemispheres 37.1
Red nucleus
nTPM: 45.5
2785 Male, age 18, unknown 68.2
2584 Male, age 75, left hemisphere 56.7
2588 Male, age 74, left hemisphere 54.3
2725 Female, age 75, unknown 45.2
1954 Female, age 42, unknown 43.9
2503 Female, age 72, unknown 42.9
1821 Female, age 72, unknown 40.8
2227 Male, age 72, unknown 40.7
2769 Male, age 72, unknown 40.7
2823 Male, age 76, right hemisphere 40.3
1865 Male, age 51, unknown 36.5
1904 Male, age 53, unknown 36.2
Substantia nigra
nTPM: 68.4
2665 Male, age 74, both hemispheres 93.9
1916 Female, age 42, unknown 91.7
1941 Male, age 53, unknown 84.3
1889 Female, age 72, unknown 83.8
1851 Male, age 51, unknown 67.4
2409 Female, age 72, unknown 59.9
2241 Male, age 72, unknown 56.6
2583 Male, age 75, right hemisphere 53.9
2590 Female, age 75, unknown 48.9
2699 Male, age 18, unknown 43.3
Superior colliculus
nTPM: 65.8
2087 Female, age 72, unknown 99.2
2668 Female, age 75, unknown 87.7
1796 Male, age 53, unknown 80.4
2261 Male, age 18, unknown 76.6
2664 Male, age 75, both hemispheres 71.1
1895 Male, age 76, right hemisphere 54.7
1839 Male, age 51, unknown 51.4
1913 Female, age 42, unknown 49.4
1995 Male, age 72, unknown 45.2
2587 Male, age 74, left hemisphere 42.0
Ventral tegmental area
nTPM: 55.5
2410 Female, age 72, unknown 66.8
2218 Male, age 76, both hemispheres 62.9
1915 Female, age 42, unknown 62.2
1942 Male, age 51, unknown 51.4
2223 Female, age 72, unknown 46.6
2021 Male, age 53, unknown 43.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.4
Samples: 183

Max nTPM: 84.1
Min nTPM: 1.4
Std nTPM: 13.8
Median nTPM: 19.2
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 84.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 76.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 69.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 55.7
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 48.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 47.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 47.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 47.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 47.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 47.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 47.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 7.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.1
FF:10158-103A5 76 years, female 7.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.4
Samples: 4

Max nTPM: 25.7
Min nTPM: 12.5
Sample A Female 25.3
Sample B Female 13.9
Sample C Male 25.7
Sample D Male 12.5
Midbrain
nTPM: 27.1
Samples: 4

Max nTPM: 48.9
Min nTPM: 10.8
Sample A Female 10.8
Sample B Female 15.6
Sample C Male 48.9
Sample D Male 33.0
Periaqueductal gray
nTPM: 19.5
Samples: 3

Max nTPM: 23.3
Min nTPM: 16.9
Sample B Female 18.4
Sample C Male 23.3
Sample D Male 16.9
Superior colliculi
nTPM: 30.1
Samples: 4

Max nTPM: 45.7
Min nTPM: 12.9
Sample A Female 29.2
Sample B Female 12.9
Sample C Male 45.7
Sample D Male 32.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 53.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.4
Samples: 4

Max nTPM: 56.6
Min nTPM: 50.0
Sample A Male 50.0
Sample B Male 52.1
Sample C Female 56.6
Sample D Female 54.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.7
69885582 Antisense, RP_050512_02_H09, Mouse strain C57BL/6J (56 days, male) 8.7

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