MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.2 nTPM
HPA Brain:23.9 nTPM
GTEx:72.2 nTPM
FANTOM5:125.0 Scaled Tags Per Million
Pig:83.0 nTPM
Mouse:20.9 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 23.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.0
2666 Male, age 74, left hemisphere 28.2
1870 Female, age 42, unknown 24.8
2828 Female, age 72, unknown 21.0
1830 Male, age 51, unknown 19.4
1833 Male, age 53, unknown 17.0
2019 Male, age 18, unknown 16.4
2586 Male, age 75, left hemisphere 14.6
2219 Male, age 76, both hemispheres 14.0
2411 Female, age 72, unknown 13.9
1827 Male, age 72, unknown 11.0
Dorsal raphe nucleus
nTPM: 17.3
2047 Male, age 72, unknown 20.6
1828 Male, age 53, unknown 18.7
2298 Female, age 72, unknown 18.2
2016 Female, age 72, unknown 16.3
2750 Male, age 76, both hemispheres 13.0
Inferior colliculus
nTPM: 20.3
1890 Male, age 53, unknown 41.0
2849 Male, age 72, unknown 15.2
1848 Female, age 42, unknown 12.5
2097 Female, age 72, unknown 12.4
Median raphe nucleus
nTPM: 23.9
2220 Male, age 76, midline 23.9
Periaquaductal grey, anterior
nTPM: 14.5
1947 Male, age 18, unknown 15.5
2502 Female, age 75, unknown 14.1
1795 Male, age 51, unknown 13.8
Periaquaductal grey, dorsal
nTPM: 17.2
2850 Male, age 76, both hemispheres 24.6
1831 Male, age 72, unknown 20.1
2464 Female, age 72, unknown 14.2
1840 Male, age 53, unknown 9.9
Periaquaductal grey, lateral
nTPM: 16.8
2140 Male, age 76, both hemispheres 18.7
2272 Male, age 74, both hemispheres 16.9
2053 Male, age 18, unknown 14.9
Pretectal area
nTPM: 13.4
1817 Female, age 42, unknown 17.9
2316 Male, age 76, right hemisphere 15.6
1944 Female, age 72, unknown 15.2
2224 Female, age 72, unknown 15.0
2825 Male, age 18, unknown 14.3
1815 Male, age 53, unknown 14.1
2667 Female, age 75, unknown 12.9
2007 Male, age 72, unknown 12.7
1816 Male, age 51, unknown 12.6
2273 Male, age 74, both hemispheres 8.8
2407 Male, age 75, both hemispheres 8.0
Red nucleus
nTPM: 23.5
2769 Male, age 72, unknown 30.8
2227 Male, age 72, unknown 29.2
2588 Male, age 74, left hemisphere 28.6
1865 Male, age 51, unknown 23.6
1904 Male, age 53, unknown 23.3
2823 Male, age 76, right hemisphere 23.3
1954 Female, age 42, unknown 22.9
2584 Male, age 75, left hemisphere 22.3
1821 Female, age 72, unknown 20.8
2503 Female, age 72, unknown 20.7
2725 Female, age 75, unknown 18.5
2785 Male, age 18, unknown 18.5
Substantia nigra
nTPM: 20.0
2665 Male, age 74, both hemispheres 39.5
2699 Male, age 18, unknown 24.6
1851 Male, age 51, unknown 22.1
2409 Female, age 72, unknown 22.0
2590 Female, age 75, unknown 19.7
1916 Female, age 42, unknown 16.6
2583 Male, age 75, right hemisphere 15.7
2241 Male, age 72, unknown 14.6
1889 Female, age 72, unknown 13.0
1941 Male, age 53, unknown 12.3
Superior colliculus
nTPM: 14.8
2087 Female, age 72, unknown 21.1
2587 Male, age 74, left hemisphere 18.9
2668 Female, age 75, unknown 18.0
1895 Male, age 76, right hemisphere 14.2
2261 Male, age 18, unknown 14.2
1995 Male, age 72, unknown 14.1
1913 Female, age 42, unknown 14.0
1796 Male, age 53, unknown 12.3
1839 Male, age 51, unknown 11.8
2664 Male, age 75, both hemispheres 9.1
Ventral tegmental area
nTPM: 22.5
1915 Female, age 42, unknown 28.3
2218 Male, age 76, both hemispheres 28.0
2021 Male, age 53, unknown 23.7
1942 Male, age 51, unknown 21.9
2410 Female, age 72, unknown 17.3
2223 Female, age 72, unknown 15.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 72.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.2
Samples: 183

Max nTPM: 2674.5
Min nTPM: 7.3
Std nTPM: 211.3
Median nTPM: 44.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 2674.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1162.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 149.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 138.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 133.9
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 131.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 127.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 118.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 113.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 110.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 108.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 125.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.0
FF:10158-103A5 76 years, female 125.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 83.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 83.0
Samples: 4

Max nTPM: 230.4
Min nTPM: 21.8
Sample A Female 47.5
Sample B Female 230.4
Sample C Male 21.8
Sample D Male 32.2
Midbrain
nTPM: 20.6
Samples: 4

Max nTPM: 28.0
Min nTPM: 7.9
Sample A Female 28.0
Sample B Female 20.6
Sample C Male 25.7
Sample D Male 7.9
Periaqueductal gray
nTPM: 6.1
Samples: 3

Max nTPM: 8.3
Min nTPM: 3.6
Sample B Female 8.3
Sample C Male 6.4
Sample D Male 3.6
Superior colliculi
nTPM: 50.7
Samples: 4

Max nTPM: 80.2
Min nTPM: 23.6
Sample A Female 60.5
Sample B Female 80.2
Sample C Male 23.6
Sample D Male 38.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.9
Samples: 4

Max nTPM: 27.0
Min nTPM: 17.8
Sample A Male 27.0
Sample B Male 20.7
Sample C Female 17.9
Sample D Female 17.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69838564 Antisense, RP_050310_01_E04, Mouse strain C57BL/6J (56 days, male) 0.4

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