MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.5 nTPM
HPA Brain:88.1 nTPM
GTEx:58.5 nTPM
FANTOM5:66.9 Scaled Tags Per Million
Pig:151.0 nTPM
Mouse:30.4 nTPM
Allen mouse:1.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 88.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.7
1870 Female, age 42, unknown 73.2
2666 Male, age 74, left hemisphere 72.2
1833 Male, age 53, unknown 69.8
2828 Female, age 72, unknown 69.3
2411 Female, age 72, unknown 67.9
1830 Male, age 51, unknown 66.6
2019 Male, age 18, unknown 64.8
2586 Male, age 75, left hemisphere 64.1
1827 Male, age 72, unknown 62.4
2219 Male, age 76, both hemispheres 56.9
Dorsal raphe nucleus
nTPM: 74.5
2016 Female, age 72, unknown 80.1
1828 Male, age 53, unknown 77.8
2047 Male, age 72, unknown 76.2
2298 Female, age 72, unknown 71.1
2750 Male, age 76, both hemispheres 67.4
Inferior colliculus
nTPM: 65.5
1848 Female, age 42, unknown 70.7
1890 Male, age 53, unknown 68.4
2849 Male, age 72, unknown 62.4
2097 Female, age 72, unknown 60.4
Median raphe nucleus
nTPM: 65.1
2220 Male, age 76, midline 65.1
Periaquaductal grey, anterior
nTPM: 70.0
1947 Male, age 18, unknown 77.1
2502 Female, age 75, unknown 74.3
1795 Male, age 51, unknown 58.5
Periaquaductal grey, dorsal
nTPM: 69.8
2850 Male, age 76, both hemispheres 79.2
1840 Male, age 53, unknown 69.9
1831 Male, age 72, unknown 65.1
2464 Female, age 72, unknown 65.0
Periaquaductal grey, lateral
nTPM: 63.6
2140 Male, age 76, both hemispheres 75.1
2053 Male, age 18, unknown 63.4
2272 Male, age 74, both hemispheres 52.1
Pretectal area
nTPM: 64.3
2667 Female, age 75, unknown 72.3
2316 Male, age 76, right hemisphere 70.3
2224 Female, age 72, unknown 68.2
2825 Male, age 18, unknown 66.6
1817 Female, age 42, unknown 65.3
1815 Male, age 53, unknown 64.5
1944 Female, age 72, unknown 63.5
2407 Male, age 75, both hemispheres 60.6
2273 Male, age 74, both hemispheres 60.3
1816 Male, age 51, unknown 57.9
2007 Male, age 72, unknown 57.7
Red nucleus
nTPM: 71.9
1821 Female, age 72, unknown 87.4
1954 Female, age 42, unknown 77.5
1904 Male, age 53, unknown 76.8
2503 Female, age 72, unknown 75.2
1865 Male, age 51, unknown 75.1
2227 Male, age 72, unknown 73.9
2769 Male, age 72, unknown 72.8
2823 Male, age 76, right hemisphere 72.5
2725 Female, age 75, unknown 67.1
2588 Male, age 74, left hemisphere 66.5
2785 Male, age 18, unknown 59.7
2584 Male, age 75, left hemisphere 58.3
Substantia nigra
nTPM: 88.1
1916 Female, age 42, unknown 116.2
2699 Male, age 18, unknown 110.9
1851 Male, age 51, unknown 102.8
2241 Male, age 72, unknown 99.8
2665 Male, age 74, both hemispheres 81.8
2409 Female, age 72, unknown 77.9
2590 Female, age 75, unknown 76.5
1941 Male, age 53, unknown 74.4
1889 Female, age 72, unknown 72.7
2583 Male, age 75, right hemisphere 67.7
Superior colliculus
nTPM: 63.3
2664 Male, age 75, both hemispheres 68.0
1839 Male, age 51, unknown 67.9
1995 Male, age 72, unknown 67.3
2587 Male, age 74, left hemisphere 66.7
1895 Male, age 76, right hemisphere 64.1
2668 Female, age 75, unknown 63.1
1913 Female, age 42, unknown 63.0
1796 Male, age 53, unknown 60.9
2087 Female, age 72, unknown 60.1
2261 Male, age 18, unknown 52.0
Ventral tegmental area
nTPM: 77.3
1915 Female, age 42, unknown 86.7
2410 Female, age 72, unknown 83.3
1942 Male, age 51, unknown 75.5
2021 Male, age 53, unknown 74.6
2218 Male, age 76, both hemispheres 74.0
2223 Female, age 72, unknown 69.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 58.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.5
Samples: 183

Max nTPM: 126.4
Min nTPM: 16.4
Std nTPM: 16.6
Median nTPM: 56.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 126.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 114.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 96.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 92.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 91.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 90.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 90.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 89.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 88.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 88.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 87.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 66.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.9
FF:10158-103A5 76 years, female 66.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 151.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 139.3
Samples: 4

Max nTPM: 152.0
Min nTPM: 117.2
Sample A Female 152.0
Sample B Female 117.2
Sample C Male 138.9
Sample D Male 149.0
Midbrain
nTPM: 151.0
Samples: 4

Max nTPM: 177.6
Min nTPM: 110.8
Sample A Female 177.6
Sample B Female 154.6
Sample C Male 161.1
Sample D Male 110.8
Periaqueductal gray
nTPM: 126.3
Samples: 3

Max nTPM: 134.8
Min nTPM: 113.1
Sample B Female 134.8
Sample C Male 131.0
Sample D Male 113.1
Superior colliculi
nTPM: 123.6
Samples: 4

Max nTPM: 135.7
Min nTPM: 95.5
Sample A Female 135.7
Sample B Female 95.5
Sample C Male 134.2
Sample D Male 129.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 30.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 31.6
Min nTPM: 28.8
Sample A Male 28.8
Sample B Male 31.6
Sample C Female 29.5
Sample D Female 31.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
2401 Antisense, RP_Baylor_102741, Mouse strain C57BL/6J (56 days, male) 1.3
2402 Antisense, RP_Baylor_102741, Mouse strain C57BL/6J (56 days, male) 0.5

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