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  • SNTA1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:152.6 nTPM
HPA Brain:137.8 nTPM
GTEx:152.6 nTPM
FANTOM5:70.3 Scaled Tags Per Million
Pig:39.4 nTPM
Mouse:26.3 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.8
Sample id Sample description nTPM
Amygdala
nTPM: 137.8
2695 Female, age 67, right hemisphere 161.8
2514 Male, age 75, right hemisphere 141.7
1987 Female, age 91, left hemisphere 133.5
2517 Female, age 94, left hemisphere 132.8
2814 Male, age 76, right hemisphere 119.3
Basal amygdala
nTPM: 132.1
2609 Male, age 75, right hemisphere 226.2
2243 Female, age 91, right hemisphere 135.7
2110 Male, age 80, left hemisphere 125.8
1955 Male, age 76, both hemispheres 109.5
2685 Female, age 94, left hemisphere 107.8
2827 Female, age 67, right hemisphere 87.4
Central amygdala
nTPM: 136.4
2515 Male, age 75, right hemisphere 162.1
1905 Male, age 76, both hemispheres 147.0
2826 Female, age 94, left hemisphere 139.0
2239 Male, age 80, left hemisphere 119.1
2701 Female, age 91, right hemisphere 114.9
Corticomedial amygdala
nTPM: 120.1
2428 Male, age 75, right hemisphere 185.0
2829 Male, age 80, left hemisphere 137.2
2242 Female, age 91, right hemisphere 113.2
2429 Female, age 94, left hemisphere 105.1
2535 Female, age 67, right hemisphere 93.5
2240 Male, age 76, both hemispheres 86.9
Lateral amygdala
nTPM: 136.2
2516 Male, age 75, right hemisphere 207.7
2256 Male, age 80, left hemisphere 144.1
2255 Female, age 91, right hemisphere 138.9
1883 Male, age 76, both hemispheres 118.9
2534 Female, age 94, left hemisphere 118.6
2830 Female, age 67, right hemisphere 88.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 152.6
Samples: 181

Max nTPM: 366.1
Min nTPM: 46.5
Std nTPM: 58.0
Median nTPM: 141.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 366.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 331.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 297.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 295.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 292.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 286.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 282.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 275.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 275.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 273.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 272.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 264.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 256.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 250.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 250.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 248.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 241.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 234.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 233.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 232.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 229.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 227.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 224.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 220.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 216.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 216.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 212.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 206.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 205.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 204.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 201.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 199.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 198.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 198.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 197.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 195.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 195.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 194.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 192.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 190.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 189.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 187.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 184.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 184.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 184.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 181.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 180.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 179.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 178.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 178.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 176.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 175.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 174.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 174.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 173.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 173.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 172.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 168.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 166.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 165.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 164.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 164.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 162.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 161.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 161.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 161.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 158.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 158.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 156.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 154.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 153.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 152.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 150.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 149.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 148.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 147.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 146.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 145.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 145.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 145.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 143.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 143.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 143.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 143.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 142.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 142.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 142.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 142.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 141.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 141.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 141.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 141.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 141.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 140.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 139.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 139.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 139.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 138.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 138.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 138.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 138.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 137.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 137.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 136.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 136.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 135.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 133.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 133.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 133.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 132.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 132.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 131.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 130.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 129.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 128.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 127.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 127.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 126.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 126.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 126.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 125.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 124.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 119.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 118.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 118.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 117.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 117.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 117.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 116.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 116.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 115.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 115.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 115.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 114.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 114.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 113.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 113.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 112.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 112.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 111.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 109.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 108.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 107.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 106.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 106.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 105.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 104.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 104.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 103.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 103.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 102.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 101.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 100.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 100.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 100.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 99.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 96.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 96.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 95.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 92.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 91.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 88.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 88.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 87.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 86.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 85.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 85.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 83.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 83.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 80.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 79.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 75.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 72.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 71.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 65.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 61.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 60.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 54.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 52.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 49.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 46.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

70.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 70.3
FF:10151-102I7 76 years, female 70.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.4
Pig sample Sample description nTPM
Amygdala
nTPM: 39.4
Samples: 4

Max nTPM: 43.1
Min nTPM: 35.7
Sample A Female 43.1
Sample B Female 35.7
Sample C Male 41.5
Sample D Male 37.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 26.3
Samples: 4

Max nTPM: 27.5
Min nTPM: 25.2
Sample A Male 25.9
Sample B Male 26.7
Sample C Female 27.5
Sample D Female 25.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
70474011 Antisense, RP_050614_04_G02, Mouse strain C57BL/6J (56 days, male) 0.3

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