MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:125.7 nTPM
HPA Brain:148.3 nTPM
GTEx:125.7 nTPM
FANTOM5:35.0 Scaled Tags Per Million
Pig:48.1 nTPM
Mouse:16.2 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 148.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.5
2586 Male, age 75, left hemisphere 226.3
2828 Female, age 72, unknown 169.2
1827 Male, age 72, unknown 118.5
1833 Male, age 53, unknown 111.4
1870 Female, age 42, unknown 105.4
2411 Female, age 72, unknown 104.1
2666 Male, age 74, left hemisphere 101.8
1830 Male, age 51, unknown 100.7
2219 Male, age 76, both hemispheres 93.2
2019 Male, age 18, unknown 83.9
Dorsal raphe nucleus
nTPM: 130.9
2016 Female, age 72, unknown 158.2
2047 Male, age 72, unknown 148.7
1828 Male, age 53, unknown 142.6
2298 Female, age 72, unknown 112.8
2750 Male, age 76, both hemispheres 92.3
Inferior colliculus
nTPM: 134.8
2849 Male, age 72, unknown 144.2
1848 Female, age 42, unknown 141.9
1890 Male, age 53, unknown 131.9
2097 Female, age 72, unknown 121.1
Median raphe nucleus
nTPM: 68.9
2220 Male, age 76, midline 68.9
Periaquaductal grey, anterior
nTPM: 148.3
2502 Female, age 75, unknown 164.1
1795 Male, age 51, unknown 142.8
1947 Male, age 18, unknown 138.0
Periaquaductal grey, dorsal
nTPM: 135.3
1840 Male, age 53, unknown 171.0
2464 Female, age 72, unknown 137.6
2850 Male, age 76, both hemispheres 124.4
1831 Male, age 72, unknown 108.0
Periaquaductal grey, lateral
nTPM: 141.4
2140 Male, age 76, both hemispheres 173.0
2053 Male, age 18, unknown 155.9
2272 Male, age 74, both hemispheres 95.3
Pretectal area
nTPM: 123.5
2825 Male, age 18, unknown 143.1
2316 Male, age 76, right hemisphere 135.5
2667 Female, age 75, unknown 135.1
1816 Male, age 51, unknown 128.9
1944 Female, age 72, unknown 128.2
2273 Male, age 74, both hemispheres 123.0
1815 Male, age 53, unknown 115.5
1817 Female, age 42, unknown 115.4
2224 Female, age 72, unknown 114.9
2407 Male, age 75, both hemispheres 114.5
2007 Male, age 72, unknown 104.6
Red nucleus
nTPM: 120.0
2503 Female, age 72, unknown 148.7
2588 Male, age 74, left hemisphere 143.6
2769 Male, age 72, unknown 138.3
2227 Male, age 72, unknown 136.9
1954 Female, age 42, unknown 133.6
1904 Male, age 53, unknown 122.7
1821 Female, age 72, unknown 119.0
1865 Male, age 51, unknown 112.2
2823 Male, age 76, right hemisphere 105.1
2725 Female, age 75, unknown 99.5
2584 Male, age 75, left hemisphere 94.8
2785 Male, age 18, unknown 85.9
Substantia nigra
nTPM: 126.0
1916 Female, age 42, unknown 166.9
2699 Male, age 18, unknown 165.0
1851 Male, age 51, unknown 138.3
2665 Male, age 74, both hemispheres 132.4
2583 Male, age 75, right hemisphere 123.8
2590 Female, age 75, unknown 121.5
1889 Female, age 72, unknown 112.6
2409 Female, age 72, unknown 110.5
2241 Male, age 72, unknown 104.1
1941 Male, age 53, unknown 85.3
Superior colliculus
nTPM: 129.8
2664 Male, age 75, both hemispheres 196.7
2261 Male, age 18, unknown 147.4
1796 Male, age 53, unknown 138.4
1995 Male, age 72, unknown 128.5
2668 Female, age 75, unknown 126.8
1839 Male, age 51, unknown 124.1
2087 Female, age 72, unknown 117.0
1895 Male, age 76, right hemisphere 109.9
1913 Female, age 42, unknown 104.9
2587 Male, age 74, left hemisphere 104.8
Ventral tegmental area
nTPM: 113.2
1915 Female, age 42, unknown 141.9
1942 Male, age 51, unknown 123.4
2410 Female, age 72, unknown 118.7
2021 Male, age 53, unknown 114.4
2223 Female, age 72, unknown 94.9
2218 Male, age 76, both hemispheres 86.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 125.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 125.7
Samples: 183

Max nTPM: 354.4
Min nTPM: 21.8
Std nTPM: 63.0
Median nTPM: 116.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 354.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 329.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 319.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 315.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 299.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 294.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 251.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 248.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 246.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 243.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 230.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 35.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.0
FF:10158-103A5 76 years, female 35.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 48.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.9
Samples: 4

Max nTPM: 58.2
Min nTPM: 37.7
Sample A Female 48.8
Sample B Female 37.7
Sample C Male 38.7
Sample D Male 58.2
Midbrain
nTPM: 48.1
Samples: 4

Max nTPM: 73.8
Min nTPM: 35.0
Sample A Female 73.8
Sample B Female 47.9
Sample C Male 35.7
Sample D Male 35.0
Periaqueductal gray
nTPM: 40.7
Samples: 3

Max nTPM: 45.7
Min nTPM: 38.1
Sample B Female 45.7
Sample C Male 38.1
Sample D Male 38.2
Superior colliculi
nTPM: 36.8
Samples: 4

Max nTPM: 42.4
Min nTPM: 25.9
Sample A Female 42.3
Sample B Female 25.9
Sample C Male 36.6
Sample D Male 42.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 16.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.2
Samples: 4

Max nTPM: 20.7
Min nTPM: 13.5
Sample A Male 20.7
Sample B Male 14.8
Sample C Female 13.5
Sample D Female 15.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70474011 Antisense, RP_050614_04_G02, Mouse strain C57BL/6J (56 days, male) 0.0

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