A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.4
nTPM
Monaco:
23.2
nTPM
Schmiedel:
27.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.4
HPA sample
nTPM
Memory B-cell nTPM: 3.4
Samples: 6
Max nTPM: 5.0
Min nTPM: 0.0
P10809_1017
4.0
P10809_1025
5.0
P10809_1044
0.0
P10809_1063
3.3
P10809_1092
4.6
P10809_1105
3.6
Naive B-cell nTPM: 3.2
Samples: 6
Max nTPM: 4.1
Min nTPM: 2.2
P10809_1011
3.6
P10809_1029
2.2
P10809_1048
3.4
P10809_1067
3.7
P10809_1091
2.3
P10809_1104
4.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 20.3
Samples: 4
Max nTPM: 22.7
Min nTPM: 18.6
RHH5310_R3677
18.6
RHH5218_R3590
21.4
RHH5247_R3619
18.6
RHH5276_R3648
22.7
Naive B-cell nTPM: 23.2
Samples: 4
Max nTPM: 31.0
Min nTPM: 16.1
RHH5308_R3675
16.1
RHH5216_R3588
16.2
RHH5245_R3617
29.3
RHH5274_R3646
31.0
Non-switched memory B-cell nTPM: 18.8
Samples: 4
Max nTPM: 23.0
Min nTPM: 12.3
RHH5309_R3676
23.0
RHH5217_R3589
20.3
RHH5246_R3618
12.3
RHH5275_R3647
19.7
Plasmablast nTPM: 22.0
Samples: 4
Max nTPM: 36.8
Min nTPM: 8.5
RHH5312_R3679
36.8
RHH5220_R3592
11.3
RHH5249_R3621
8.5
RHH5278_R3650
31.2
Switched memory B-cell nTPM: 21.4
Samples: 4
Max nTPM: 25.1
Min nTPM: 18.4
RHH5311_R3678
18.6
RHH5219_R3591
25.1
RHH5248_R3620
23.6
RHH5277_R3649
18.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.6
Schmiedel sample id
TPM
Naive B-cell TPM: 27.6
Samples: 91
Max TPM: 39.9
Min TPM: 17.5
B_CELL_NAIVE_1
39.9
B_CELL_NAIVE_2
39.6
B_CELL_NAIVE_3
37.6
B_CELL_NAIVE_4
35.2
B_CELL_NAIVE_5
35.1
B_CELL_NAIVE_6
35.0
B_CELL_NAIVE_7
34.5
B_CELL_NAIVE_8
34.5
B_CELL_NAIVE_9
34.4
B_CELL_NAIVE_10
33.7
B_CELL_NAIVE_11
33.5
B_CELL_NAIVE_12
33.2
B_CELL_NAIVE_13
33.2
B_CELL_NAIVE_14
32.6
B_CELL_NAIVE_15
31.4
B_CELL_NAIVE_16
31.2
B_CELL_NAIVE_17
31.1
B_CELL_NAIVE_18
31.0
B_CELL_NAIVE_19
30.9
B_CELL_NAIVE_20
30.8
B_CELL_NAIVE_21
30.6
B_CELL_NAIVE_22
30.6
B_CELL_NAIVE_23
30.6
B_CELL_NAIVE_24
30.0
B_CELL_NAIVE_25
30.0
B_CELL_NAIVE_26
30.0
B_CELL_NAIVE_27
29.8
B_CELL_NAIVE_28
29.8
B_CELL_NAIVE_29
29.5
B_CELL_NAIVE_30
29.5
B_CELL_NAIVE_31
29.4
B_CELL_NAIVE_32
29.3
B_CELL_NAIVE_33
29.3
B_CELL_NAIVE_34
29.1
B_CELL_NAIVE_35
29.0
B_CELL_NAIVE_36
28.7
B_CELL_NAIVE_37
28.7
B_CELL_NAIVE_38
28.6
B_CELL_NAIVE_39
28.5
B_CELL_NAIVE_40
28.2
B_CELL_NAIVE_41
28.1
B_CELL_NAIVE_42
28.0
B_CELL_NAIVE_43
27.9
B_CELL_NAIVE_44
27.8
B_CELL_NAIVE_45
27.7
B_CELL_NAIVE_46
27.6
B_CELL_NAIVE_47
27.6
B_CELL_NAIVE_48
27.5
B_CELL_NAIVE_49
27.3
B_CELL_NAIVE_50
27.1
B_CELL_NAIVE_51
26.7
B_CELL_NAIVE_52
26.1
B_CELL_NAIVE_53
26.1
B_CELL_NAIVE_54
25.8
B_CELL_NAIVE_55
25.6
B_CELL_NAIVE_56
25.5
B_CELL_NAIVE_57
25.3
B_CELL_NAIVE_58
25.3
B_CELL_NAIVE_59
25.2
B_CELL_NAIVE_60
25.2
B_CELL_NAIVE_61
25.0
B_CELL_NAIVE_62
25.0
B_CELL_NAIVE_63
24.7
B_CELL_NAIVE_64
24.7
B_CELL_NAIVE_65
24.6
B_CELL_NAIVE_66
24.6
B_CELL_NAIVE_67
24.5
B_CELL_NAIVE_68
24.5
B_CELL_NAIVE_69
24.4
B_CELL_NAIVE_70
24.3
B_CELL_NAIVE_71
24.2
B_CELL_NAIVE_72
24.0
B_CELL_NAIVE_73
23.6
B_CELL_NAIVE_74
23.5
B_CELL_NAIVE_75
23.0
B_CELL_NAIVE_76
23.0
B_CELL_NAIVE_77
22.7
B_CELL_NAIVE_78
22.7
B_CELL_NAIVE_79
22.7
B_CELL_NAIVE_80
22.6
B_CELL_NAIVE_81
22.6
B_CELL_NAIVE_82
22.5
B_CELL_NAIVE_83
22.4
B_CELL_NAIVE_84
22.4
B_CELL_NAIVE_85
22.2
B_CELL_NAIVE_86
22.2
B_CELL_NAIVE_87
21.7
B_CELL_NAIVE_88
21.3
B_CELL_NAIVE_89
20.9
B_CELL_NAIVE_90
19.6
B_CELL_NAIVE_91
17.5
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The Human Protein Atlas project is funded
