A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.0
nTPM
Monaco:
34.6
nTPM
Schmiedel:
26.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.0
HPA sample
nTPM
Classical monocyte nTPM: 5.8
Samples: 6
Max nTPM: 8.5
Min nTPM: 4.3
P10809_1003
8.5
P10809_1020
5.7
P10809_1039
4.9
P10809_1058
5.1
P10809_1080
6.5
P10809_1107
4.3
Intermediate monocyte nTPM: 6.7
Samples: 6
Max nTPM: 12.8
Min nTPM: 4.7
P10809_1004
4.7
P10809_1023
5.9
P10809_1042
5.5
P10809_1061
12.8
P10809_1081
6.3
P10809_1108
4.7
Non-classical monocyte nTPM: 9.0
Samples: 5
Max nTPM: 21.9
Min nTPM: 5.1
P10809_1005
5.4
P10809_1053
7.4
P10809_1072
21.9
P10809_1082
5.1
P10809_1109
5.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.6
Monaco sample
nTPM
Classical monocyte nTPM: 31.0
Samples: 4
Max nTPM: 39.0
Min nTPM: 24.9
RHH5313_R3680
39.0
RHH5221_R3593
28.5
RHH5250_R3622
31.4
RHH5279_R3651
24.9
Intermediate monocyte nTPM: 27.6
Samples: 4
Max nTPM: 35.5
Min nTPM: 22.1
RHH5314_R3681
30.1
RHH5222_R3594
22.7
RHH5251_R3623
22.1
RHH5280_R3652
35.5
Non-classical monocyte nTPM: 34.6
Samples: 4
Max nTPM: 42.5
Min nTPM: 27.1
RHH5315_R3682
37.4
RHH5223_R3595
31.4
RHH5252_R3624
42.5
RHH5281_R3653
27.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.4
Schmiedel sample id
TPM
Classical monocyte TPM: 26.4
Samples: 91
Max TPM: 41.0
Min TPM: 17.9
MONOCYTES_1
41.0
MONOCYTES_2
38.6
MONOCYTES_3
35.2
MONOCYTES_4
34.7
MONOCYTES_5
34.0
MONOCYTES_6
33.0
MONOCYTES_7
32.9
MONOCYTES_8
31.1
MONOCYTES_9
30.9
MONOCYTES_10
30.5
MONOCYTES_11
30.3
MONOCYTES_12
30.2
MONOCYTES_13
29.9
MONOCYTES_14
29.8
MONOCYTES_15
29.7
MONOCYTES_16
29.5
MONOCYTES_17
29.3
MONOCYTES_18
29.2
MONOCYTES_19
29.0
MONOCYTES_20
29.0
MONOCYTES_21
28.9
MONOCYTES_22
28.3
MONOCYTES_23
28.3
MONOCYTES_24
28.0
MONOCYTES_25
28.0
MONOCYTES_26
27.9
MONOCYTES_27
27.8
MONOCYTES_28
27.8
MONOCYTES_29
27.7
MONOCYTES_30
27.7
MONOCYTES_31
27.6
MONOCYTES_32
27.5
MONOCYTES_33
27.5
MONOCYTES_34
27.3
MONOCYTES_35
27.2
MONOCYTES_36
27.2
MONOCYTES_37
27.1
MONOCYTES_38
27.0
MONOCYTES_39
26.9
MONOCYTES_40
26.8
MONOCYTES_41
26.8
MONOCYTES_42
26.8
MONOCYTES_43
26.8
MONOCYTES_44
26.5
MONOCYTES_45
26.5
MONOCYTES_46
26.3
MONOCYTES_47
26.1
MONOCYTES_48
25.9
MONOCYTES_49
25.9
MONOCYTES_50
25.7
MONOCYTES_51
25.5
MONOCYTES_52
25.5
MONOCYTES_53
25.4
MONOCYTES_54
25.3
MONOCYTES_55
25.3
MONOCYTES_56
25.2
MONOCYTES_57
25.2
MONOCYTES_58
25.2
MONOCYTES_59
25.2
MONOCYTES_60
24.9
MONOCYTES_61
24.8
MONOCYTES_62
24.1
MONOCYTES_63
24.0
MONOCYTES_64
23.9
MONOCYTES_65
23.7
MONOCYTES_66
23.6
MONOCYTES_67
23.6
MONOCYTES_68
23.5
MONOCYTES_69
23.3
MONOCYTES_70
23.2
MONOCYTES_71
23.0
MONOCYTES_72
23.0
MONOCYTES_73
22.9
MONOCYTES_74
22.9
MONOCYTES_75
22.7
MONOCYTES_76
22.7
MONOCYTES_77
22.7
MONOCYTES_78
22.6
MONOCYTES_79
22.3
MONOCYTES_80
22.3
MONOCYTES_81
22.3
MONOCYTES_82
22.1
MONOCYTES_83
21.9
MONOCYTES_84
21.9
MONOCYTES_85
21.8
MONOCYTES_86
21.3
MONOCYTES_87
20.7
MONOCYTES_88
20.6
MONOCYTES_89
20.6
MONOCYTES_90
18.9
MONOCYTES_91
17.9
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Non-classical monocyte TPM: 25.2
Samples: 90
Max TPM: 33.6
Min TPM: 19.0
M2_1
33.6
M2_2
33.3
M2_3
31.8
M2_4
31.1
M2_5
30.5
M2_6
29.9
M2_7
29.9
M2_8
29.9
M2_9
29.6
M2_10
29.4
M2_11
29.3
M2_12
29.0
M2_13
28.6
M2_14
28.6
M2_15
28.4
M2_16
28.0
M2_17
28.0
M2_18
27.8
M2_19
27.8
M2_20
27.6
M2_21
27.5
M2_22
27.1
M2_23
27.1
M2_24
27.0
M2_25
26.9
M2_26
26.8
M2_27
26.6
M2_28
26.4
M2_29
26.3
M2_30
26.1
M2_31
26.1
M2_32
26.1
M2_33
26.0
M2_34
26.0
M2_35
25.9
M2_36
25.9
M2_37
25.8
M2_38
25.6
M2_39
25.6
M2_40
25.4
M2_41
25.3
M2_42
25.3
M2_43
25.2
M2_44
25.2
M2_45
25.1
M2_46
25.0
M2_47
24.9
M2_48
24.8
M2_49
24.8
M2_50
24.8
M2_51
24.8
M2_52
24.7
M2_53
24.6
M2_54
24.4
M2_55
24.4
M2_56
24.3
M2_57
24.3
M2_58
24.2
M2_59
23.9
M2_60
23.9
M2_61
23.8
M2_62
23.7
M2_63
23.7
M2_64
23.6
M2_65
23.5
M2_66
23.3
M2_67
23.3
M2_68
23.2
M2_69
23.2
M2_70
23.1
M2_71
22.9
M2_72
22.8
M2_73
22.3
M2_74
22.1
M2_75
22.0
M2_76
21.9
M2_77
21.9
M2_78
21.7
M2_79
21.4
M2_80
21.3
M2_81
21.2
M2_82
21.2
M2_83
20.9
M2_84
20.8
M2_85
20.8
M2_86
20.7
M2_87
20.4
M2_88
20.1
M2_89
19.6
M2_90
19.0
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