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  • CHMP4B
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:139.8 nTPM
HPA Brain:78.6 nTPM
GTEx:139.8 nTPM
FANTOM5:139.9 Scaled Tags Per Million
Pig:73.4 nTPM
Mouse:180.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.6
Sample id Sample description nTPM
Amygdala
nTPM: 78.6
2514 Male, age 75, right hemisphere 85.3
2814 Male, age 76, right hemisphere 82.9
2695 Female, age 67, right hemisphere 79.6
2517 Female, age 94, left hemisphere 75.7
1987 Female, age 91, left hemisphere 69.4
Basal amygdala
nTPM: 73.9
2609 Male, age 75, right hemisphere 82.5
2243 Female, age 91, right hemisphere 79.2
2110 Male, age 80, left hemisphere 74.1
1955 Male, age 76, both hemispheres 70.2
2827 Female, age 67, right hemisphere 69.5
2685 Female, age 94, left hemisphere 67.6
Central amygdala
nTPM: 76.3
2826 Female, age 94, left hemisphere 80.6
2239 Male, age 80, left hemisphere 75.7
2701 Female, age 91, right hemisphere 75.6
1905 Male, age 76, both hemispheres 75.2
2515 Male, age 75, right hemisphere 74.6
Corticomedial amygdala
nTPM: 73.7
2829 Male, age 80, left hemisphere 78.5
2428 Male, age 75, right hemisphere 74.7
2535 Female, age 67, right hemisphere 73.1
2242 Female, age 91, right hemisphere 73.0
2240 Male, age 76, both hemispheres 71.7
2429 Female, age 94, left hemisphere 70.9
Lateral amygdala
nTPM: 72.5
2516 Male, age 75, right hemisphere 82.6
2534 Female, age 94, left hemisphere 80.1
1883 Male, age 76, both hemispheres 78.2
2830 Female, age 67, right hemisphere 71.4
2255 Female, age 91, right hemisphere 62.7
2256 Male, age 80, left hemisphere 60.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

139.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 139.8
Samples: 181

Max nTPM: 358.0
Min nTPM: 92.7
Std nTPM: 31.4
Median nTPM: 136.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 358.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 272.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 234.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 228.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 213.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 200.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 198.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 196.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 195.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 194.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 193.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 179.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 178.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 177.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 174.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 174.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 172.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 169.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 168.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 168.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 166.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 166.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 166.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 165.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 165.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 164.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 164.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 162.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 162.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 161.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 161.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 161.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 160.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 159.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 159.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 157.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 155.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 154.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 154.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 154.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 154.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 154.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 154.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 152.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 152.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 150.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 150.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 149.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 149.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 149.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 149.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 149.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 148.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 148.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 147.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 147.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 146.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 146.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 146.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 145.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 144.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 144.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 143.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 143.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 142.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 142.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 141.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 141.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 141.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 141.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 140.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 140.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 140.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 140.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 140.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 140.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 140.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 140.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 140.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 139.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 139.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 139.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 138.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 137.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 137.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 137.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 137.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 136.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 136.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 136.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 136.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 136.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 135.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 134.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 133.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 133.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 133.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 132.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 132.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 132.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 132.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 132.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 131.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 131.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 131.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 131.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 131.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 130.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 130.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 129.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 129.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 129.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 129.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 128.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 127.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 127.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 127.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 126.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 126.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 126.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 125.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 125.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 125.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 124.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 124.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 124.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 124.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 123.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 123.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 123.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 122.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 122.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 122.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 121.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 121.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 121.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 120.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 119.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 119.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 119.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 119.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 117.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 117.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 117.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 116.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 115.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 115.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 115.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 113.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 113.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 113.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 112.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 111.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 111.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 111.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 111.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 111.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 111.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 110.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 110.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 110.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 109.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 108.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 108.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 107.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 107.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 107.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 106.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 106.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 105.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 105.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 104.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 103.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 103.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 99.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 99.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 98.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 95.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 93.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 93.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 92.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

139.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 139.9
FF:10151-102I7 76 years, female 139.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.4
Pig sample Sample description nTPM
Amygdala
nTPM: 73.4
Samples: 4

Max nTPM: 95.4
Min nTPM: 63.1
Sample A Female 95.4
Sample B Female 68.8
Sample C Male 63.1
Sample D Male 66.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

180.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 180.7
Samples: 4

Max nTPM: 191.7
Min nTPM: 170.3
Sample A Male 183.2
Sample B Male 177.6
Sample C Female 191.7
Sample D Female 170.3

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