MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:130.6 nTPM
HPA Brain:82.3 nTPM
GTEx:130.6 nTPM
FANTOM5:97.7 Scaled Tags Per Million
Pig:108.1 nTPM
Mouse:170.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 82.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.1
2666 Male, age 74, left hemisphere 97.6
1870 Female, age 42, unknown 76.8
2586 Male, age 75, left hemisphere 76.4
1827 Male, age 72, unknown 74.6
1833 Male, age 53, unknown 72.8
2219 Male, age 76, both hemispheres 71.8
2411 Female, age 72, unknown 69.8
2019 Male, age 18, unknown 68.3
2828 Female, age 72, unknown 68.3
1830 Male, age 51, unknown 64.9
Dorsal raphe nucleus
nTPM: 70.2
1828 Male, age 53, unknown 81.5
2047 Male, age 72, unknown 70.4
2750 Male, age 76, both hemispheres 69.1
2298 Female, age 72, unknown 67.0
2016 Female, age 72, unknown 62.8
Inferior colliculus
nTPM: 72.5
2849 Male, age 72, unknown 80.6
1848 Female, age 42, unknown 74.9
1890 Male, age 53, unknown 67.9
2097 Female, age 72, unknown 66.7
Median raphe nucleus
nTPM: 80.1
2220 Male, age 76, midline 80.1
Periaquaductal grey, anterior
nTPM: 71.6
1947 Male, age 18, unknown 75.8
1795 Male, age 51, unknown 70.6
2502 Female, age 75, unknown 68.4
Periaquaductal grey, dorsal
nTPM: 68.2
1840 Male, age 53, unknown 77.2
2850 Male, age 76, both hemispheres 73.6
1831 Male, age 72, unknown 62.2
2464 Female, age 72, unknown 59.8
Periaquaductal grey, lateral
nTPM: 63.2
2140 Male, age 76, both hemispheres 69.4
2272 Male, age 74, both hemispheres 61.5
2053 Male, age 18, unknown 58.7
Pretectal area
nTPM: 77.8
1817 Female, age 42, unknown 95.2
1816 Male, age 51, unknown 92.5
2007 Male, age 72, unknown 92.3
1944 Female, age 72, unknown 84.2
1815 Male, age 53, unknown 82.2
2407 Male, age 75, both hemispheres 73.5
2224 Female, age 72, unknown 72.6
2825 Male, age 18, unknown 71.7
2667 Female, age 75, unknown 70.2
2316 Male, age 76, right hemisphere 61.3
2273 Male, age 74, both hemispheres 60.0
Red nucleus
nTPM: 74.7
2725 Female, age 75, unknown 88.0
1821 Female, age 72, unknown 83.9
2503 Female, age 72, unknown 81.3
2785 Male, age 18, unknown 76.2
2769 Male, age 72, unknown 75.6
2227 Male, age 72, unknown 74.4
1954 Female, age 42, unknown 73.9
2588 Male, age 74, left hemisphere 73.1
1865 Male, age 51, unknown 72.2
2584 Male, age 75, left hemisphere 68.8
2823 Male, age 76, right hemisphere 64.9
1904 Male, age 53, unknown 63.6
Substantia nigra
nTPM: 82.3
1916 Female, age 42, unknown 100.3
2699 Male, age 18, unknown 89.5
1889 Female, age 72, unknown 87.3
1851 Male, age 51, unknown 87.2
2665 Male, age 74, both hemispheres 86.7
1941 Male, age 53, unknown 81.0
2241 Male, age 72, unknown 79.0
2409 Female, age 72, unknown 72.6
2583 Male, age 75, right hemisphere 71.2
2590 Female, age 75, unknown 68.4
Superior colliculus
nTPM: 72.5
2668 Female, age 75, unknown 83.7
1796 Male, age 53, unknown 77.2
2087 Female, age 72, unknown 75.4
2261 Male, age 18, unknown 75.4
1839 Male, age 51, unknown 73.5
2587 Male, age 74, left hemisphere 73.1
1895 Male, age 76, right hemisphere 70.9
2664 Male, age 75, both hemispheres 69.6
1913 Female, age 42, unknown 67.9
1995 Male, age 72, unknown 58.7
Ventral tegmental area
nTPM: 74.6
1915 Female, age 42, unknown 82.9
2218 Male, age 76, both hemispheres 79.4
2223 Female, age 72, unknown 79.3
2410 Female, age 72, unknown 76.5
1942 Male, age 51, unknown 67.3
2021 Male, age 53, unknown 62.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 130.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 130.6
Samples: 183

Max nTPM: 193.1
Min nTPM: 86.6
Std nTPM: 19.8
Median nTPM: 128.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 193.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 186.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 183.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 179.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 178.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 173.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 173.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 168.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 167.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 166.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 165.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 97.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.7
FF:10158-103A5 76 years, female 97.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 108.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 96.1
Samples: 4

Max nTPM: 117.8
Min nTPM: 79.8
Sample A Female 117.8
Sample B Female 79.8
Sample C Male 103.4
Sample D Male 83.3
Midbrain
nTPM: 108.1
Samples: 4

Max nTPM: 117.2
Min nTPM: 96.1
Sample A Female 110.2
Sample B Female 96.1
Sample C Male 117.2
Sample D Male 108.8
Periaqueductal gray
nTPM: 89.4
Samples: 3

Max nTPM: 100.8
Min nTPM: 79.2
Sample B Female 88.3
Sample C Male 100.8
Sample D Male 79.2
Superior colliculi
nTPM: 106.8
Samples: 4

Max nTPM: 124.7
Min nTPM: 77.5
Sample A Female 124.7
Sample B Female 77.5
Sample C Male 120.9
Sample D Male 104.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 170.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 170.4
Samples: 4

Max nTPM: 176.1
Min nTPM: 166.6
Sample A Male 176.1
Sample B Male 169.4
Sample C Female 166.6
Sample D Female 169.3

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