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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Antibody HPA013143
Antibody CAB000118
Glial cells
Medium
Not detected
Neuronal cells
Medium
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2463.7
Sample id
Sample description
nTPM
Hippocampus nTPM: 2463.7
2148
Female, age 91, left hemisphere
3249.1
2529
Female, age 94, left hemisphere
2603.7
2621
Female, age 67, right hemisphere
2533.6
1911
Female, age 85, right hemisphere
2446.4
1898
Male, age 80, left hemisphere
2296.3
1855
Male, age 76, left hemisphere
1653.2
Dentate gyrus nTPM: 2005.7
2528
Male, age 74, both hemispheres
2591.1
2246
Female, age 85, both hemispheres
2552.0
1927
Female, age 91, both hemispheres
2140.3
2530
Female, age 94, left hemisphere
2000.4
2531
Female, age 67, both hemispheres
1528.6
2010
Male, age 76, both hemispheres
1222.1
Entorhinal gyrus nTPM: 1933.8
2117
Female, age 91, right hemisphere
3557.3
1938
Female, age 85, left hemisphere
2881.0
2686
Male, age 75, right hemisphere
1496.0
2764
Male, age 80, right hemisphere
1357.9
1787
Male, age 76, left hemisphere
1257.3
2613
Female, age 94, left hemisphere
1053.3
Hippocampus, CA1 nTPM: 1891.9
2527
Male, age 74, both hemispheres
2998.0
2749
Male, age 80, left hemisphere
2085.7
1873
Female, age 85, both hemispheres
1927.6
2082
Female, age 91, right hemisphere
1384.1
2045
Male, age 76, both hemispheres
1064.3
Hippocampus, CA2 nTPM: 1915.3
2249
Male, age 74, both hemispheres
2650.7
1940
Female, age 85, left hemisphere
2102.8
2113
Female, age 91, right hemisphere
2097.6
1963
Male, age 80, left hemisphere
1835.3
2437
Female, age 94, left hemisphere
1748.1
1892
Male, age 76, both hemispheres
1057.1
Hippocampus, CA3 nTPM: 2018.6
2436
Male, age 74, both hemispheres
2692.6
2861
Female, age 67, both hemispheres
2415.0
2620
Female, age 94, left hemisphere
1930.2
2137
Male, age 80, left hemisphere
1883.2
1891
Female, age 85, both hemispheres
1773.9
1867
Male, age 76, both hemispheres
1416.5
Parahippocampal cortex nTPM: 1843.6
1933
Female, age 85, both hemispheres
2802.2
2692
Male, age 74, both hemispheres
2338.4
2245
Female, age 91, both hemispheres
2317.6
2622
Female, age 67, right hemisphere
2001.3
2250
Female, age 67, right hemisphere
1977.7
1990
Female, age 91, right hemisphere
1623.7
2532
Female, age 72, left hemisphere
1499.9
1850
Male, age 80, both hemispheres
1455.6
2693
Female, age 94, both hemispheres
1237.5
2018
Male, age 76, both hemispheres
1182.4
Perirhinal gyrus nTPM: 1471.6
1794
Male, age 80, right hemisphere
2056.3
1847
Female, age 91, left hemisphere
1654.2
1841
Female, age 85, right hemisphere
1464.6
2521
Female, age 94, right hemisphere
1393.6
2848
Male, age 76, right hemisphere
789.1
Subiculum nTPM: 1950.7
2729
Female, age 91, right hemisphere
2828.8
2619
Male, age 74, both hemispheres
2426.1
2438
Female, age 94, left hemisphere
1746.6
1977
Female, age 85, both hemispheres
1726.4
1901
Male, age 80, both hemispheres
1552.8
2042
Male, age 76, both hemispheres
1423.8
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2915.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 2915.0
Samples: 255
Max nTPM: 11029.1
Min nTPM: 486.2
Std nTPM: 1496.1
Median nTPM: 2664.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
11029.1
GTEX-1LKK1-0011-R1b-SM-F2TAF
50-59 years, female
8638.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
8426.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
7091.0
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
7007.4
GTEX-1JJEA-0011-R1b-SM-F6495
60-69 years, male
6805.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
6705.9
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
6629.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
6377.0
GTEX-1R9K4-0011-R1a-SM-F342F
60-69 years, male
6350.8
GTEX-1O9I2-0011-R1a-SM-F2TAW
50-59 years, male
6259.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
6057.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
5866.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
5782.1
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
5693.4
GTEX-11OF3-0011-R1b-SM-H65ZT
60-69 years, male
5659.7
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
5361.0
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
5247.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
5226.4
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
5153.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
5146.7
GTEX-1OJC4-0011-R1a-SM-F2TAZ
50-59 years, female
5112.0
GTEX-1MJK2-0011-R1b-SM-F649H
50-59 years, male
4885.1
GTEX-1MA7X-0011-R1b-SM-F2TAB
60-69 years, male
4861.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
4829.9
GTEX-1192X-0011-R1b-SM-GI4VU
50-59 years, male
4711.2
GTEX-1PIIG-0011-R1a-SM-F649P
30-39 years, male
4697.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
4664.6
GTEX-1N2EE-0011-R1a-SM-F3K5K
60-69 years, male
4661.9
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
4544.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
4385.3
GTEX-1KANB-0011-R1a-SM-F3K5M
50-59 years, male
4352.7
GTEX-1R9PO-0011-R1b-SM-F2I2G
60-69 years, female
4273.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
4271.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
4214.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
4201.7
GTEX-11DXY-0011-R1b-SM-GI4VQ
60-69 years, male
4189.7
GTEX-1LSNL-0011-R1a-SM-F3K51
50-59 years, male
4188.3
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
4170.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
4096.8
GTEX-1PWST-0011-R1b-SM-F2I38
70-79 years, male
4072.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
4026.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
4016.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
3992.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
3971.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
3970.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
3964.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
3960.9
GTEX-1NV8Z-0011-R1b-SM-F647K
60-69 years, male
3954.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
3910.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
3855.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
3846.1
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
3829.4
GTEX-1KWVE-0011-R1a-SM-F649B
30-39 years, male
3826.9
GTEX-1I19N-0011-R1b-SM-GOR1A
70-79 years, male
3780.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
3770.0
GTEX-1LSVX-0011-R1a-SM-F3K5F
60-69 years, male
3726.7
GTEX-1MCQQ-0011-R1a-SM-F341G
60-69 years, male
3714.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
3685.8
GTEX-1QMI2-0011-R1b-SM-F3K5Q
60-69 years, male
3679.0
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
3677.8
GTEX-15DYW-0011-R1a-SM-H6Q6Q
60-69 years, female
3651.8
GTEX-12ZZZ-0011-R1a-SM-GIN8I
60-69 years, male
3647.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
3643.5
GTEX-ZYFD-0011-R1b-SM-GRR1T
50-59 years, male
3632.7
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
3622.6
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
3606.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
3558.2
GTEX-ZAK1-0011-R1a-SM-GRR1R
50-59 years, female
3546.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
3545.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
3496.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
3477.0
GTEX-1LVAO-0011-R1a-SM-F649O
60-69 years, male
3455.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
3424.6
GTEX-1RQED-0011-R1a-SM-F3K5W
60-69 years, male
3405.7
GTEX-117XS-0011-R1b-SM-GJ3PQ
60-69 years, male
3366.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
3361.8
GTEX-1P4AB-0011-R1b-SM-F2TAV
50-59 years, male
3361.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
3356.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
3331.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
3289.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
3288.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
3283.2
GTEX-1JMPZ-0011-R1b-SM-F6497
30-39 years, male
3281.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
3228.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
3217.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
3212.2
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
3209.6
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
3178.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
3172.7
GTEX-13VXU-0011-R1a-SM-GINAT
50-59 years, male
3164.9
GTEX-1LVA9-0011-R1b-SM-F2TB5
50-59 years, male
3118.3
GTEX-1KD4Q-0011-R1a-SM-F3K4Z
40-49 years, male
3116.9
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
3099.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
3087.8
GTEX-11ZUS-0011-R1a-SM-GI4W7
30-39 years, male
3078.7
GTEX-1RDX4-0011-R1a-SM-F3K5H
50-59 years, female
3070.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
3060.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
3060.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
3057.7
GTEX-ZYY3-0011-R1b-SM-GPI92
60-69 years, female
3018.3
GTEX-1JMOU-0011-R1b-SM-F341B
60-69 years, female
3015.4
GTEX-11DYG-0011-R1a-SM-GI4X6
60-69 years, male
2993.2
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
2942.3
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
2939.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
2916.6
GTEX-1JJ6O-0011-R1b-SM-F2I2M
60-69 years, male
2907.8
GTEX-14BMV-0011-R1b-SM-G9ERL
50-59 years, male
2904.6
GTEX-1PPGY-0011-R1b-SM-G8LN3
60-69 years, male
2904.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
2882.3
GTEX-11H98-0011-R1a-SM-GIN8O
50-59 years, male
2854.4
GTEX-RU72-0011-R1A-SM-HAUZG
50-59 years, female
2851.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
2849.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
2840.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
2832.7
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
2793.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
2768.9
GTEX-1JMQK-0011-R1a-SM-F6484
60-69 years, male
2744.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
2730.5
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
2727.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
2727.1
GTEX-1JN6P-0011-R1b-SM-G8LL3
60-69 years, male
2716.0
GTEX-1JMQL-0011-R1a-SM-F3K4U
50-59 years, female
2713.3
GTEX-12ZZY-0011-R1a-SM-GIN9E
60-69 years, male
2713.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
2698.3
GTEX-1POEN-0011-R1b-SM-F3K3K
30-39 years, female
2672.1
GTEX-11TTK-0011-R1b-SM-GIN92
60-69 years, female
2668.0
GTEX-11PRG-0011-R1b-SM-H7OHD
50-59 years, male
2664.3
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
2657.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
2631.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
2574.5
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
2565.2
GTEX-12696-0011-R1a-SM-GHWPW
60-69 years, male
2524.8
GTEX-1RQEC-0011-R1b-SM-F2I2E
60-69 years, male
2511.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
2509.4
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
2508.8
GTEX-14E6C-0011-R1a-SM-G8W86
40-49 years, male
2495.4
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
2460.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
2460.3
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
2459.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
2436.8
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
2429.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
2422.5
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
2420.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
2409.9
GTEX-11NV4-0011-R1a-SM-GINAK
60-69 years, male
2398.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
2397.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
2392.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
2391.8
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
2383.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
2358.8
GTEX-13PLJ-0011-R1a-SM-GJ3QF
60-69 years, female
2352.0
GTEX-12126-0011-R1a-SM-GJ3Q8
20-29 years, male
2344.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
2341.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
2341.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
2339.3
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
2338.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
2332.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
2300.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
2291.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
2255.1
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
2248.9
GTEX-14DAQ-0011-R1a-SM-G8W85
60-69 years, female
2234.1
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
2227.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
2218.5
GTEX-1N5O9-0011-R1b-SM-F3K4W
60-69 years, male
2212.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
2211.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
2177.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
2177.3
GTEX-12WSA-0011-R1b-SM-GI4VI
60-69 years, male
2111.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
2109.8
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
2093.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
2087.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
2084.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
2082.8
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
2072.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
2049.4
GTEX-15SHU-0011-R1b-SM-H6Q7U
40-49 years, female
2047.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
2013.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
2007.1
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
1980.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
1958.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
1949.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
1945.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
1918.8
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
1902.7
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
1896.8
GTEX-15EO6-0011-R1b-SM-H7OGP
50-59 years, male
1892.2
GTEX-13SLX-0011-R1a-SM-H6Q8N
50-59 years, female
1873.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
1866.1
GTEX-14JFF-0011-R1b-SM-G8W88
60-69 years, male
1854.2
GTEX-1QP6S-0011-R1b-SM-F3K59
40-49 years, male
1820.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
1798.7
GTEX-1JMQJ-0011-R1b-SM-F2T9P
50-59 years, male
1798.0
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
1790.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
1785.6
GTEX-1RNSC-0011-R1b-SM-F342D
60-69 years, male
1781.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
1781.4
GTEX-1JMLX-0011-R1b-SM-G9ERV
50-59 years, male
1780.0
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
1762.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
1758.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
1752.9
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
1731.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
1718.3
GTEX-ZAJG-0011-R1a-SM-GQ1CV
50-59 years, female
1686.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
1675.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
1671.9
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
1637.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
1615.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
1599.3
GTEX-1F52S-0011-R1a-SM-9OSX9
60-69 years, female
1596.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
1591.4
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
1583.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
1582.6
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
1553.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
1538.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
1534.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
1521.6
GTEX-1N2EF-0011-R1a-SM-F2TAT
60-69 years, male
1503.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
1490.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
1480.2
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
1454.3
GTEX-1LH75-0011-R1a-SM-F341Y
50-59 years, female
1443.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
1440.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
1433.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
1433.0
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
1404.4
GTEX-15RJE-0011-R1b-SM-H6Q7N
40-49 years, male
1397.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
1384.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
1378.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
1369.1
GTEX-13PVQ-0011-R1b-SM-GJ3RQ
50-59 years, male
1366.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
1360.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
1353.0
GTEX-ZZPT-0011-R1b-SM-GNINL
50-59 years, male
1350.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
1350.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
1283.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
1272.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
1220.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
1219.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
1214.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
1211.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
1198.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
1191.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
1173.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
1158.6
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
1057.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
1035.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
973.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
930.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
661.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
634.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
614.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
585.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
486.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1365.1
Pig sample
Sample description
nTPM
Subiculum nTPM: 1197.5
Samples: 4
Max nTPM: 1544.0
Min nTPM: 915.8
Sample A
Female
1544.0
Sample B
Female
1236.0
Sample C
Male
915.8
Sample D
Male
1094.1
Dorsal hippocampus nTPM: 1365.1
Samples: 4
Max nTPM: 1766.9
Min nTPM: 984.9
Sample A
Female
1766.9
Sample B
Female
1150.2
Sample C
Male
1558.5
Sample D
Male
984.9
Entorhinal cortex nTPM: 962.9
Samples: 4
Max nTPM: 1216.0
Min nTPM: 596.4
Sample A
Female
851.7
Sample B
Female
1216.0
Sample C
Male
1187.3
Sample D
Male
596.4
Ventral hippocampus nTPM: 1231.3
Samples: 4
Max nTPM: 1529.2
Min nTPM: 1040.2
Sample A
Female
1267.7
Sample B
Female
1088.0
Sample C
Male
1529.2
Sample D
Male
1040.2
HIPPOCAMPAL FORMATION - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1968.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 1830.9
Samples: 4
Max nTPM: 1942.5
Min nTPM: 1723.9
Sample A
Male
1886.8
Sample B
Male
1770.4
Sample C
Female
1942.5
Sample D
Female
1723.9
Hippocampal formation nTPM: 1968.9
Samples: 4
Max nTPM: 2103.0
Min nTPM: 1842.5
Sample A
Male
1966.6
Sample B
Male
1842.5
Sample C
Female
1963.4
Sample D
Female
2103.0
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.