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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
Brain methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2915.0 nTPM
HPA Brain:2463.7 nTPM
GTEx:2915.0 nTPM
FANTOM5:2955.5 Scaled Tags Per Million
Pig:1365.1 nTPM
Mouse:1968.9 nTPM
Allen mouse:27.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA013143Antibody CAB000118
Glial cells MediumNot detected
Neuronal cells MediumMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2463.7
Sample id Sample description nTPM
Hippocampus
nTPM: 2463.7
2148 Female, age 91, left hemisphere 3249.1
2529 Female, age 94, left hemisphere 2603.7
2621 Female, age 67, right hemisphere 2533.6
1911 Female, age 85, right hemisphere 2446.4
1898 Male, age 80, left hemisphere 2296.3
1855 Male, age 76, left hemisphere 1653.2
Dentate gyrus
nTPM: 2005.7
2528 Male, age 74, both hemispheres 2591.1
2246 Female, age 85, both hemispheres 2552.0
1927 Female, age 91, both hemispheres 2140.3
2530 Female, age 94, left hemisphere 2000.4
2531 Female, age 67, both hemispheres 1528.6
2010 Male, age 76, both hemispheres 1222.1
Entorhinal gyrus
nTPM: 1933.8
2117 Female, age 91, right hemisphere 3557.3
1938 Female, age 85, left hemisphere 2881.0
2686 Male, age 75, right hemisphere 1496.0
2764 Male, age 80, right hemisphere 1357.9
1787 Male, age 76, left hemisphere 1257.3
2613 Female, age 94, left hemisphere 1053.3
Hippocampus, CA1
nTPM: 1891.9
2527 Male, age 74, both hemispheres 2998.0
2749 Male, age 80, left hemisphere 2085.7
1873 Female, age 85, both hemispheres 1927.6
2082 Female, age 91, right hemisphere 1384.1
2045 Male, age 76, both hemispheres 1064.3
Hippocampus, CA2
nTPM: 1915.3
2249 Male, age 74, both hemispheres 2650.7
1940 Female, age 85, left hemisphere 2102.8
2113 Female, age 91, right hemisphere 2097.6
1963 Male, age 80, left hemisphere 1835.3
2437 Female, age 94, left hemisphere 1748.1
1892 Male, age 76, both hemispheres 1057.1
Hippocampus, CA3
nTPM: 2018.6
2436 Male, age 74, both hemispheres 2692.6
2861 Female, age 67, both hemispheres 2415.0
2620 Female, age 94, left hemisphere 1930.2
2137 Male, age 80, left hemisphere 1883.2
1891 Female, age 85, both hemispheres 1773.9
1867 Male, age 76, both hemispheres 1416.5
Parahippocampal cortex
nTPM: 1843.6
1933 Female, age 85, both hemispheres 2802.2
2692 Male, age 74, both hemispheres 2338.4
2245 Female, age 91, both hemispheres 2317.6
2622 Female, age 67, right hemisphere 2001.3
2250 Female, age 67, right hemisphere 1977.7
1990 Female, age 91, right hemisphere 1623.7
2532 Female, age 72, left hemisphere 1499.9
1850 Male, age 80, both hemispheres 1455.6
2693 Female, age 94, both hemispheres 1237.5
2018 Male, age 76, both hemispheres 1182.4
Perirhinal gyrus
nTPM: 1471.6
1794 Male, age 80, right hemisphere 2056.3
1847 Female, age 91, left hemisphere 1654.2
1841 Female, age 85, right hemisphere 1464.6
2521 Female, age 94, right hemisphere 1393.6
2848 Male, age 76, right hemisphere 789.1
Subiculum
nTPM: 1950.7
2729 Female, age 91, right hemisphere 2828.8
2619 Male, age 74, both hemispheres 2426.1
2438 Female, age 94, left hemisphere 1746.6
1977 Female, age 85, both hemispheres 1726.4
1901 Male, age 80, both hemispheres 1552.8
2042 Male, age 76, both hemispheres 1423.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2915.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 2915.0
Samples: 255

Max nTPM: 11029.1
Min nTPM: 486.2
Std nTPM: 1496.1
Median nTPM: 2664.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 11029.1
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 8638.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 8426.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 7091.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 7007.4
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 6805.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 6705.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 6629.8
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 6377.0
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 6350.8
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 6259.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 6057.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 5866.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 5782.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 5693.4
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 5659.7
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 5361.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 5247.9
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 5226.4
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 5153.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 5146.7
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 5112.0
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 4885.1
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 4861.4
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 4829.9
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 4711.2
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 4697.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 4664.6
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 4661.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 4544.8
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 4385.3
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 4352.7
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 4273.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 4271.9
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 4214.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 4201.7
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 4189.7
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 4188.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 4170.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 4096.8
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 4072.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 4026.2
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 4016.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 3992.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 3971.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 3970.2
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 3964.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 3960.9
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 3954.7
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 3910.7
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 3855.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 3846.1
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 3829.4
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 3826.9
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 3780.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 3770.0
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 3726.7
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 3714.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 3685.8
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 3679.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 3677.8
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 3651.8
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 3647.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 3643.5
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 3632.7
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 3622.6
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 3606.4
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 3558.2
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 3546.3
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 3545.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 3496.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 3477.0
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 3455.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 3424.6
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 3405.7
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 3366.0
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 3361.8
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 3361.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 3356.4
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 3331.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 3289.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 3288.7
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 3283.2
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 3281.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 3228.2
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 3217.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 3212.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 3209.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 3178.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 3172.7
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 3164.9
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 3118.3
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 3116.9
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 3099.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 3087.8
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 3078.7
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 3070.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 3060.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 3060.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 3057.7
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 3018.3
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 3015.4
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 2993.2
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 2942.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 2939.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 2916.6
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 2907.8
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 2904.6
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 2904.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 2882.3
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 2854.4
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 2851.7
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 2849.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 2840.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 2832.7
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 2793.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 2768.9
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 2744.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 2730.5
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 2727.2
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 2727.1
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 2716.0
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 2713.3
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 2713.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 2698.3
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 2672.1
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 2668.0
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 2664.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 2657.3
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 2631.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 2574.5
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 2565.2
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 2524.8
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 2511.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 2509.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 2508.8
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 2495.4
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 2460.4
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 2460.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 2459.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 2436.8
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 2429.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 2422.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 2420.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 2409.9
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 2398.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 2397.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 2392.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 2391.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 2383.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 2358.8
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 2352.0
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 2344.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 2341.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 2341.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 2339.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 2338.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 2332.2
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 2300.7
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 2291.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 2255.1
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 2248.9
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 2234.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 2227.8
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 2218.5
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 2212.8
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 2211.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 2177.4
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 2177.3
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 2111.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 2109.8
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 2093.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 2087.9
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 2084.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 2082.8
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 2072.9
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 2049.4
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 2047.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 2013.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 2007.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 1980.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 1958.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 1949.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 1945.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 1918.8
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 1902.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 1896.8
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 1892.2
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 1873.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 1866.1
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 1854.2
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 1820.5
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 1798.7
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 1798.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 1790.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 1785.6
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 1781.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 1781.4
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 1780.0
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 1762.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 1758.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 1752.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 1731.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 1718.3
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 1686.2
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 1675.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 1671.9
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 1637.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 1615.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 1599.3
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 1596.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 1591.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 1583.2
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 1582.6
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 1553.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 1538.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 1534.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 1521.6
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 1503.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 1490.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 1480.2
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 1454.3
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 1443.6
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 1440.8
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 1433.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 1433.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 1404.4
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 1397.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 1384.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 1378.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 1369.1
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 1366.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 1360.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 1353.0
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 1350.8
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 1350.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 1283.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 1272.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 1220.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 1219.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 1214.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 1211.0
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 1198.7
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 1191.0
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 1173.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 1158.6
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 1057.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 1035.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 973.7
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 930.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 661.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 634.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 614.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 585.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 486.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2955.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 2955.5
FF:10169-103B7 60 years, female 3059.6
FF:10153-102I9 76 years, female 2851.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1365.1
Pig sample Sample description nTPM
Subiculum
nTPM: 1197.5
Samples: 4

Max nTPM: 1544.0
Min nTPM: 915.8
Sample A Female 1544.0
Sample B Female 1236.0
Sample C Male 915.8
Sample D Male 1094.1
Dorsal hippocampus
nTPM: 1365.1
Samples: 4

Max nTPM: 1766.9
Min nTPM: 984.9
Sample A Female 1766.9
Sample B Female 1150.2
Sample C Male 1558.5
Sample D Male 984.9
Entorhinal cortex
nTPM: 962.9
Samples: 4

Max nTPM: 1216.0
Min nTPM: 596.4
Sample A Female 851.7
Sample B Female 1216.0
Sample C Male 1187.3
Sample D Male 596.4
Ventral hippocampus
nTPM: 1231.3
Samples: 4

Max nTPM: 1529.2
Min nTPM: 1040.2
Sample A Female 1267.7
Sample B Female 1088.0
Sample C Male 1529.2
Sample D Male 1040.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1968.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1830.9
Samples: 4

Max nTPM: 1942.5
Min nTPM: 1723.9
Sample A Male 1886.8
Sample B Male 1770.4
Sample C Female 1942.5
Sample D Female 1723.9
Hippocampal formation
nTPM: 1968.9
Samples: 4

Max nTPM: 2103.0
Min nTPM: 1842.5
Sample A Male 1966.6
Sample B Male 1842.5
Sample C Female 1963.4
Sample D Female 2103.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

27.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 27.6
75496213 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 29.5
75496215 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 28.5
75457613 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 28.4
75457611 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 27.5
75457612 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 27.3
75496720 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 27.2
75496212 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 27.0
75457610 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 26.8
75496721 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 26.7
75496211 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 26.4
69120555 Antisense, RP_050330_01_A08, Mouse strain C57BL/6J (56 days, male) 25.2
75492865 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 24.0
75492852 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 23.5
75496741 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 23.1
75496731 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 22.7
75492862 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 22.6
75492864 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 21.6
69117385 Antisense, RP_050330_01_A08, Mouse strain C57BL/6J (56 days, male) 20.0

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