MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2869.9 nTPM
HPA Brain:2759.7 nTPM
GTEx:2869.9 nTPM
FANTOM5:1369.3 Scaled Tags Per Million
Pig:2197.7 nTPM
Mouse:1312.2 nTPM
Allen mouse:24.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 2759.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1919.8
2828 Female, age 72, unknown 3091.1
2586 Male, age 75, left hemisphere 3020.4
2019 Male, age 18, unknown 1974.9
1833 Male, age 53, unknown 1820.4
2219 Male, age 76, both hemispheres 1778.4
1827 Male, age 72, unknown 1725.0
1830 Male, age 51, unknown 1517.1
2666 Male, age 74, left hemisphere 1490.2
1870 Female, age 42, unknown 1486.2
2411 Female, age 72, unknown 1294.5
Dorsal raphe nucleus
nTPM: 2141.3
2016 Female, age 72, unknown 2534.1
2298 Female, age 72, unknown 2374.9
1828 Male, age 53, unknown 2127.2
2047 Male, age 72, unknown 2096.5
2750 Male, age 76, both hemispheres 1573.8
Inferior colliculus
nTPM: 2522.7
1848 Female, age 42, unknown 3130.6
2849 Male, age 72, unknown 2763.9
1890 Male, age 53, unknown 2175.7
2097 Female, age 72, unknown 2020.7
Median raphe nucleus
nTPM: 1971.4
2220 Male, age 76, midline 1971.4
Periaquaductal grey, anterior
nTPM: 2535.1
1795 Male, age 51, unknown 2655.9
2502 Female, age 75, unknown 2587.1
1947 Male, age 18, unknown 2362.3
Periaquaductal grey, dorsal
nTPM: 2759.7
2850 Male, age 76, both hemispheres 3466.4
1840 Male, age 53, unknown 3205.8
2464 Female, age 72, unknown 2349.5
1831 Male, age 72, unknown 2017.2
Periaquaductal grey, lateral
nTPM: 2579.7
2140 Male, age 76, both hemispheres 3256.8
2053 Male, age 18, unknown 2321.2
2272 Male, age 74, both hemispheres 2161.0
Pretectal area
nTPM: 2503.8
1817 Female, age 42, unknown 3399.8
2273 Male, age 74, both hemispheres 3399.5
1815 Male, age 53, unknown 2659.0
2667 Female, age 75, unknown 2631.1
2007 Male, age 72, unknown 2424.5
2407 Male, age 75, both hemispheres 2340.3
2224 Female, age 72, unknown 2217.0
1816 Male, age 51, unknown 2176.6
1944 Female, age 72, unknown 2126.1
2825 Male, age 18, unknown 2098.2
2316 Male, age 76, right hemisphere 2069.6
Red nucleus
nTPM: 2536.4
2503 Female, age 72, unknown 3406.7
2227 Male, age 72, unknown 3051.7
2769 Male, age 72, unknown 3039.6
1904 Male, age 53, unknown 2939.8
1954 Female, age 42, unknown 2902.6
1865 Male, age 51, unknown 2795.0
1821 Female, age 72, unknown 2737.7
2588 Male, age 74, left hemisphere 2338.0
2785 Male, age 18, unknown 2259.0
2823 Male, age 76, right hemisphere 1912.0
2725 Female, age 75, unknown 1791.3
2584 Male, age 75, left hemisphere 1263.8
Substantia nigra
nTPM: 1833.0
2699 Male, age 18, unknown 2585.6
2583 Male, age 75, right hemisphere 2298.0
1889 Female, age 72, unknown 2211.6
1916 Female, age 42, unknown 2133.9
1851 Male, age 51, unknown 1893.5
2665 Male, age 74, both hemispheres 1706.5
2590 Female, age 75, unknown 1671.2
1941 Male, age 53, unknown 1373.3
2241 Male, age 72, unknown 1297.8
2409 Female, age 72, unknown 1158.7
Superior colliculus
nTPM: 2279.6
2664 Male, age 75, both hemispheres 3028.7
2668 Female, age 75, unknown 2981.6
1995 Male, age 72, unknown 2603.5
1796 Male, age 53, unknown 2273.4
2087 Female, age 72, unknown 2260.2
1839 Male, age 51, unknown 2172.2
2261 Male, age 18, unknown 2139.0
2587 Male, age 74, left hemisphere 1952.8
1913 Female, age 42, unknown 1850.6
1895 Male, age 76, right hemisphere 1533.5
Ventral tegmental area
nTPM: 1781.1
1942 Male, age 51, unknown 1968.9
2218 Male, age 76, both hemispheres 1869.0
1915 Female, age 42, unknown 1841.8
2410 Female, age 72, unknown 1820.4
2021 Male, age 53, unknown 1682.4
2223 Female, age 72, unknown 1503.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2869.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2869.9
Samples: 183

Max nTPM: 9965.1
Min nTPM: 391.0
Std nTPM: 1752.9
Median nTPM: 2448.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 9965.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 9145.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 8602.8
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 7790.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 7786.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 7689.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 7214.9
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 7170.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 7161.5
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 6603.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 6325.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1369.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1369.3
FF:10158-103A5 76 years, female 1369.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 2197.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2160.8
Samples: 4

Max nTPM: 2519.2
Min nTPM: 1490.7
Sample A Female 2328.8
Sample B Female 2519.2
Sample C Male 1490.7
Sample D Male 2304.3
Midbrain
nTPM: 1939.7
Samples: 4

Max nTPM: 3207.6
Min nTPM: 1138.6
Sample A Female 3207.6
Sample B Female 2250.3
Sample C Male 1138.6
Sample D Male 1162.1
Periaqueductal gray
nTPM: 2197.7
Samples: 3

Max nTPM: 2532.9
Min nTPM: 1853.9
Sample B Female 2206.4
Sample C Male 2532.9
Sample D Male 1853.9
Superior colliculi
nTPM: 1851.7
Samples: 4

Max nTPM: 2202.8
Min nTPM: 1431.5
Sample A Female 2202.8
Sample B Female 2190.2
Sample C Male 1431.5
Sample D Male 1582.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1312.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 1312.2
Samples: 4

Max nTPM: 1511.2
Min nTPM: 1113.6
Sample A Male 1511.2
Sample B Male 1219.5
Sample C Female 1113.6
Sample D Female 1404.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 24.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.7
75496213 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 26.3
75457612 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 25.0
75457610 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 24.9
75496215 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 24.8
75457613 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 24.1
69120555 Antisense, RP_050330_01_A08, Mouse strain C57BL/6J (56 days, male) 23.7
75457611 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 23.6
75496721 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 23.6
75496212 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 23.2

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