On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
2869.9
nTPM
HPA Brain:
2769.7
nTPM
GTEx:
2869.9
nTPM
FANTOM5:
1369.3
Scaled Tags Per Million
Macaque:
571.6
nTPM
Mouse:
1382.6
nTPM
Pig:
2203.7
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2769.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 1926.0
2828
Female, age 72, unknown
3100.9
2586
Male, age 75, left hemisphere
3028.0
2019
Male, age 18, unknown
1981.2
1833
Male, age 53, unknown
1826.9
2219
Male, age 76, both hemispheres
1784.5
1827
Male, age 72, unknown
1731.0
1830
Male, age 51, unknown
1522.1
2666
Male, age 74, left hemisphere
1495.8
1870
Female, age 42, unknown
1490.3
2411
Female, age 72, unknown
1299.4
Dorsal raphe nucleus nTPM: 2149.1
2016
Female, age 72, unknown
2543.5
2298
Female, age 72, unknown
2384.9
1828
Male, age 53, unknown
2134.9
2047
Male, age 72, unknown
2103.0
2750
Male, age 76, both hemispheres
1579.0
Inferior colliculus nTPM: 2531.8
1848
Female, age 42, unknown
3140.5
2849
Male, age 72, unknown
2774.2
1890
Male, age 53, unknown
2183.4
2097
Female, age 72, unknown
2029.0
Median raphe nucleus nTPM: 1977.8
2220
Male, age 76, midline
1977.8
Periaquaductal grey, anterior nTPM: 2543.9
1795
Male, age 51, unknown
2665.7
2502
Female, age 75, unknown
2596.2
1947
Male, age 18, unknown
2369.9
Periaquaductal grey, dorsal nTPM: 2769.7
2850
Male, age 76, both hemispheres
3479.5
1840
Male, age 53, unknown
3216.2
2464
Female, age 72, unknown
2358.6
1831
Male, age 72, unknown
2024.6
Periaquaductal grey, lateral nTPM: 2589.4
2140
Male, age 76, both hemispheres
3269.1
2053
Male, age 18, unknown
2329.3
2272
Male, age 74, both hemispheres
2169.8
Pretectal area nTPM: 2512.2
2273
Male, age 74, both hemispheres
3413.4
1817
Female, age 42, unknown
3410.3
1815
Male, age 53, unknown
2666.7
2667
Female, age 75, unknown
2639.3
2007
Male, age 72, unknown
2433.5
2407
Male, age 75, both hemispheres
2347.2
2224
Female, age 72, unknown
2226.4
1816
Male, age 51, unknown
2182.8
1944
Female, age 72, unknown
2132.2
2825
Male, age 18, unknown
2105.5
2316
Male, age 76, right hemisphere
2076.9
Red nucleus nTPM: 2545.1
2503
Female, age 72, unknown
3418.4
2227
Male, age 72, unknown
3061.5
2769
Male, age 72, unknown
3050.5
1904
Male, age 53, unknown
2952.0
1954
Female, age 42, unknown
2912.0
1865
Male, age 51, unknown
2804.8
1821
Female, age 72, unknown
2745.8
2588
Male, age 74, left hemisphere
2345.2
2785
Male, age 18, unknown
2267.3
2823
Male, age 76, right hemisphere
1918.9
2725
Female, age 75, unknown
1797.9
2584
Male, age 75, left hemisphere
1267.2
Substantia nigra nTPM: 1839.1
2699
Male, age 18, unknown
2595.0
2583
Male, age 75, right hemisphere
2302.7
1889
Female, age 72, unknown
2219.1
1916
Female, age 42, unknown
2142.1
1851
Male, age 51, unknown
1900.1
2665
Male, age 74, both hemispheres
1713.4
2590
Female, age 75, unknown
1676.3
1941
Male, age 53, unknown
1377.6
2241
Male, age 72, unknown
1301.8
2409
Female, age 72, unknown
1162.8
Superior colliculus nTPM: 2287.3
2664
Male, age 75, both hemispheres
3037.8
2668
Female, age 75, unknown
2992.3
1995
Male, age 72, unknown
2612.7
1796
Male, age 53, unknown
2281.4
2087
Female, age 72, unknown
2267.3
1839
Male, age 51, unknown
2179.7
2261
Male, age 18, unknown
2146.2
2587
Male, age 74, left hemisphere
1960.2
1913
Female, age 42, unknown
1857.4
1895
Male, age 76, right hemisphere
1538.5
Ventral tegmental area nTPM: 1787.2
1942
Male, age 51, unknown
1975.9
2218
Male, age 76, both hemispheres
1875.0
1915
Female, age 42, unknown
1847.7
2410
Female, age 72, unknown
1828.2
2021
Male, age 53, unknown
1688.1
2223
Female, age 72, unknown
1508.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2869.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 2869.9
Samples: 183
Max nTPM: 9965.1
Min nTPM: 391.0
Std nTPM: 1752.9
Median nTPM: 2448.3
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
9965.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
9145.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
8602.8
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
7790.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
7786.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
7689.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
7214.9
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
7170.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
7161.5
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
6603.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
6325.3
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
6059.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
5999.1
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
5768.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
5733.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
5614.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
5556.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
5083.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
5016.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
4925.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
4921.1
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
4862.8
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
4768.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
4614.9
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
4607.1
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
4499.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
4406.8
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
4389.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
4321.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
4277.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
4239.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
4166.1
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
4158.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
4117.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
4108.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
4092.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
3895.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
3795.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
3738.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
3736.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
3693.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
3655.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
3624.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
3617.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
3600.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
3587.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
3587.0
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
3562.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
3561.1
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
3504.2
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
3502.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
3489.9
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
3452.7
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
3370.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
3268.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
3265.6
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
3239.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
3207.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
3146.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
3113.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
3103.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
3000.7
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
2994.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
2986.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
2980.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
2946.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
2945.8
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
2919.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
2919.0
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
2900.6
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
2883.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
2869.3
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
2852.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
2822.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
2797.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
2780.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
2764.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
2754.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
2731.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
2704.4
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
2682.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
2632.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
2512.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
2495.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
2490.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
2471.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
2468.1
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
2467.0
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
2464.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
2457.9
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
2456.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
2448.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
2447.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
2436.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
2424.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
2401.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
2375.0
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
2351.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
2346.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
2334.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
2288.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
2272.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
2263.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
2261.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
2257.8
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
2232.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
2220.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
2200.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
2196.5
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
2184.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
2184.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
2172.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
2157.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
2128.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
2091.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
2078.9
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
2077.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
2068.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
2045.2
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
2020.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
2013.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
2001.7
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
2001.7
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
1890.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
1881.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1876.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1870.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1863.8
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
1818.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
1807.6
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
1797.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
1750.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
1746.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
1743.1
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
1734.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1723.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
1717.7
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
1712.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1692.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1690.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1685.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1654.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
1637.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
1628.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1621.4
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
1571.7
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
1492.0
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
1483.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
1456.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1429.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1423.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1395.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1395.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1384.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1384.0
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
1382.3
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
1378.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1347.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1347.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1320.9
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
1320.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1093.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1071.0
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
1048.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
1013.8
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
979.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
964.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
963.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
924.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
875.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
844.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
824.1
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
803.0
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
801.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
800.4
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
793.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
677.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
671.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
624.8
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
621.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
576.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
566.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
391.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
571.6
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 571.6
Samples: 1
Max nTPM: 571.6
Min nTPM: 571.6
Sample A
571.6
Midbrain nTPM: 458.6
Samples: 1
Max nTPM: 458.6
Min nTPM: 458.6
Sample A
458.6
Superior colliculi nTPM: 522.9
Samples: 1
Max nTPM: 522.9
Min nTPM: 522.9
Sample A
522.9
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2203.7
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 2122.2
Samples: 3
Max nTPM: 2527.6
Min nTPM: 1496.4
Sample A
Female
2342.7
Sample B
Female
2527.6
Sample C
Male
1496.4
Midbrain nTPM: 1521.7
Samples: 3
Max nTPM: 2259.1
Min nTPM: 1142.0
Sample B
Female
2259.1
Sample C
Male
1142.0
Sample D
Male
1164.1
Periaqueductal gray nTPM: 2203.6
Samples: 3
Max nTPM: 2540.9
Min nTPM: 1857.4
Sample B
Female
2212.6
Sample C
Male
2540.9
Sample D
Male
1857.4
Superior colliculi nTPM: 1861.6
Samples: 4
Max nTPM: 2217.7
Min nTPM: 1438.4
Sample A
Female
2217.7
Sample B
Female
2200.4
Sample C
Male
1438.4
Sample D
Male
1589.8
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1382.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 1382.5
Samples: 4
Max nTPM: 1439.5
Min nTPM: 1268.6
Sample A
1439.5
Sample B
1412.2
Sample C
1268.6
Sample D
1409.8
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The Human Protein Atlas project is funded
