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  • TISSUE

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  • CST3
BRAIN HYPOTHALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hypothalamus
Brain methods
HYPOTHALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1657.6 nTPM
HPA Brain:1943.8 nTPM
GTEx:1657.6 nTPM
Pig:2229.9 nTPM
Mouse:1953.7 nTPM
Allen mouse:27.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1943.8
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 1647.3
2226 Male, age 75, left hemisphere 1891.4
1961 Female, age 42, unknown 1403.2
Dorsomedial nucleus
nTPM: 1666.4
1989 Male, age 62, unknown 2354.6
2041 Female, age 72, unknown 1398.0
2017 Female, age 42, unknown 1246.6
Lateral hypothalamic area
nTPM: 1487.8
1791 Male, age 80, right hemisphere 2278.1
2271 Male, age 75, both hemispheres 1816.9
2412 Male, age 62, unknown 1008.2
2228 Male, age 66, unknown 847.9
Mammillary body
nTPM: 1609.4
1945 Male, age 80, right hemisphere 2059.4
2413 Male, age 66, unknown 1669.0
1834 Female, age 42, unknown 1567.0
1923 Female, age 72, unknown 1520.0
1948 Female, age 72, unknown 1231.6
Paraventricular nucleus
nTPM: 964.1
2700 Male, age 62, unknown 964.1
Preoptic area
nTPM: 1206.4
2414 Female, age 72, unknown 1302.8
1861 Female, age 42, unknown 1234.3
1907 Male, age 80, right hemisphere 1082.0
Supraoptic nucleus
nTPM: 1943.8
1894 Female, age 72, unknown 2312.5
2043 Male, age 62, unknown 1972.8
2835 Female, age 72, unknown 1546.1
Ventromedial nucleus
nTPM: 1152.2
1982 Female, age 72, unknown 1173.0
1822 Female, age 42, unknown 1131.4

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1657.6
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 1657.6
Samples: 257

Max nTPM: 6190.2
Min nTPM: 453.9
Std nTPM: 832.4
Median nTPM: 1491.2
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 6190.2
GTEX-1O9I2-0011-R8a-SM-F2TAX 50-59 years, male 5657.5
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 5459.1
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 4299.4
GTEX-14E7W-0011-R8b-SM-GQ1D6 70-79 years, male 4261.0
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 3930.4
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 3786.9
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 3607.1
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 3511.0
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 3428.5
GTEX-12126-0011-R8a-SM-GI4WV 20-29 years, male 3379.9
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 3363.8
GTEX-1N5O9-0011-R8a-SM-F649C 60-69 years, male 3358.1
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 3348.7
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 3342.6
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 3139.7
GTEX-1JMPZ-0011-R8b-SM-F341A 30-39 years, male 3076.1
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 3074.4
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 2877.5
GTEX-1MA7X-0011-R8a-SM-G9EQD 60-69 years, male 2866.9
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 2866.0
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 2766.6
GTEX-QDT8-0011-R8A-SM-G8W63 30-39 years, female 2764.8
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 2728.1
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 2673.5
GTEX-1RQEC-0011-R8b-SM-F648X 60-69 years, male 2651.3
GTEX-1JMLX-0011-R8a-SM-G9EPQ 50-59 years, male 2621.7
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 2580.1
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 2519.9
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 2473.7
GTEX-13PVQ-0011-R8a-SM-GJ3PT 50-59 years, male 2471.2
GTEX-1CAV2-0011-R8a-SM-GRR24 40-49 years, female 2421.3
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 2407.5
GTEX-1RAZS-0011-R8a-SM-F2TBI 50-59 years, male 2398.6
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 2374.1
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 2347.9
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 2343.5
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 2321.1
GTEX-1QP6S-0011-R8a-SM-F649M 40-49 years, male 2309.0
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 2302.4
GTEX-WL46-0011-R8B-SM-H7OHG 50-59 years, male 2294.4
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 2270.8
GTEX-1PWST-0011-R8a-SM-F3K5P 70-79 years, male 2260.2
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 2243.4
GTEX-1PPGY-0011-R8a-SM-F649R 60-69 years, male 2222.8
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 2204.3
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 2178.3
GTEX-1KWVE-0011-R8a-SM-F3K4V 30-39 years, male 2174.8
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 2138.3
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 2124.1
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 2124.0
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 2102.2
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 2064.4
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 2060.2
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 2056.6
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 2037.5
GTEX-1JN1M-0011-R8b-SM-F6485 60-69 years, female 2034.6
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 2003.3
GTEX-1LSVX-0011-R8a-SM-F2TB3 60-69 years, male 1997.4
GTEX-1RQED-0011-R8a-SM-G8LKO 60-69 years, male 1980.9
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 1976.5
GTEX-1NV5F-0011-R8b-SM-F647Z 60-69 years, female 1974.9
GTEX-1JMOU-0011-R8b-SM-F2TA9 60-69 years, female 1952.6
GTEX-1R9K4-0011-R8b-SM-F649L 60-69 years, male 1942.4
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 1938.0
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 1886.4
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 1875.9
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 1872.8
GTEX-12696-0011-R8a-SM-GINAP 60-69 years, male 1866.1
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 1859.0
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 1854.0
GTEX-13VXU-0011-R8b-SM-GJ3RR 50-59 years, male 1838.2
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 1828.8
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 1823.9
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 1798.5
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 1798.4
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 1783.2
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 1781.1
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 1774.4
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 1771.6
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 1767.3
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 1761.1
GTEX-11GS4-0011-R8b-SM-GI4XA 60-69 years, male 1756.9
GTEX-ZYY3-0011-R8a-SM-H7OHF 60-69 years, female 1753.3
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 1729.8
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 1725.0
GTEX-1N2DW-0011-R8a-SM-EY5YD 50-59 years, male 1716.2
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 1715.2
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 1706.6
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 1701.2
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 1701.0
GTEX-1LG7Y-0011-R8b-SM-F3K5C 50-59 years, male 1685.5
GTEX-1LKK1-0011-R8a-SM-F341O 50-59 years, female 1679.4
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 1678.4
GTEX-1LSNL-0011-R8b-SM-F2TAH 50-59 years, male 1659.1
GTEX-1R46S-0011-R8a-SM-F3K4Q 60-69 years, female 1655.8
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 1653.7
GTEX-1RDX4-0011-R8a-SM-G8LLT 50-59 years, female 1653.1
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 1639.7
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 1639.7
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 1627.3
GTEX-12WSD-0011-R8b-SM-9QEGI 60-69 years, female 1619.0
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 1617.9
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 1615.0
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 1606.8
GTEX-13PLJ-0011-R8a-SM-GJ3QG 60-69 years, female 1601.1
GTEX-ZAK1-0011-R8a-SM-H7OGE 50-59 years, female 1599.8
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 1599.7
GTEX-11DXW-0011-R8a-SM-GIN8T 40-49 years, male 1592.8
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 1589.1
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 1585.3
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 1584.7
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 1576.7
GTEX-S7SE-0011-R8A-SM-F649T 50-59 years, male 1567.3
GTEX-1MCQQ-0011-R8b-SM-F341H 60-69 years, male 1566.9
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 1560.6
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 1551.1
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 1541.8
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 1541.1
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 1537.4
GTEX-1OJC4-0011-R8a-SM-F3K5B 50-59 years, female 1524.5
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 1522.8
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 1514.6
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 1501.6
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 1499.9
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 1499.9
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 1492.2
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 1492.0
GTEX-117YW-0011-R8a-SM-GINAB 50-59 years, male 1491.2
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 1490.9
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 1480.8
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 1470.9
GTEX-1KD4Q-0011-R8a-SM-F341N 40-49 years, male 1455.6
GTEX-11ZU8-0011-R8b-SM-GHWOM 60-69 years, male 1452.4
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 1449.4
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 1433.1
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 1431.7
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 1430.9
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 1429.2
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 1424.3
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 1413.8
GTEX-1QMI2-0011-R8a-SM-F3429 60-69 years, male 1413.3
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 1413.2
GTEX-1JJEA-0011-R8a-SM-F3419 60-69 years, male 1409.9
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 1404.2
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 1403.7
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 1401.2
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 1401.1
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 1372.9
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 1368.5
GTEX-1NV8Z-0011-R8b-SM-F3K3J 60-69 years, male 1367.4
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 1362.9
GTEX-1JN6P-0011-R8a-SM-F6499 60-69 years, male 1355.4
GTEX-1JMQJ-0011-R8a-SM-G8LKT 50-59 years, male 1346.6
GTEX-1POEN-0011-R8b-SM-F647O 30-39 years, female 1344.6
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 1343.0
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 1335.3
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 1320.7
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 1309.5
GTEX-1N2EE-0011-R8a-SM-F3K4X 60-69 years, male 1300.0
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 1295.9
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 1295.3
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 1294.7
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 1289.8
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 1287.9
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 1266.7
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 1266.4
GTEX-15SHU-0011-R8a-SM-H6Q7V 40-49 years, female 1264.1
GTEX-11GSO-0011-R8b-SM-GJ3PM 60-69 years, male 1264.0
GTEX-1R9PO-0011-R8a-SM-F2TA3 60-69 years, female 1260.8
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 1253.2
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 1248.6
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 1245.7
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 1240.3
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 1239.0
GTEX-111FC-0011-R8b-SM-GI4VS 60-69 years, male 1237.7
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 1233.6
GTEX-1LVAO-0011-R8a-SM-F3K5J 60-69 years, male 1232.5
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 1229.6
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 1218.0
GTEX-117XS-0011-R8b-SM-GHWOD 60-69 years, male 1209.8
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 1198.1
GTEX-15RJE-0011-R8a-SM-H7OGM 40-49 years, male 1197.9
GTEX-1JMQK-0011-R8a-SM-G8LMS 60-69 years, male 1195.9
GTEX-1N2EF-0011-R8a-SM-F6481 60-69 years, male 1194.3
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 1187.3
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 1173.5
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 1164.2
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 1163.4
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 1159.2
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 1150.9
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 1145.7
GTEX-1LVA9-0011-R8a-SM-F3K5G 50-59 years, male 1138.8
GTEX-1QEPI-0011-R8a-SM-G8LLI 60-69 years, female 1136.1
GTEX-1KANB-0011-R8a-SM-F3K5N 50-59 years, male 1135.9
GTEX-11O72-0011-R8a-SM-GJ3R9 40-49 years, male 1133.5
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 1122.0
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 1107.5
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 1106.7
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 1104.9
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 1104.1
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 1103.3
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 1096.1
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 1094.3
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 1091.7
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 1087.2
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 1086.3
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 1058.5
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 1051.5
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 1045.9
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 1040.5
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 1036.7
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 1033.5
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 1013.6
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 1003.5
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 1000.4
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 998.5
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 988.4
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 987.7
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 978.9
GTEX-1MJK2-0011-R8a-SM-F341I 50-59 years, male 957.6
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 941.3
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 936.8
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 922.9
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 913.9
GTEX-11NV4-0011-R8b-SM-GHWO4 60-69 years, male 904.0
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 900.6
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 898.6
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 886.3
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 879.2
GTEX-ZAJG-0011-R8a-SM-H6Q6K 50-59 years, female 872.7
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 845.7
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 843.6
GTEX-15DYW-0011-R8b-SM-GRR3B 60-69 years, female 842.7
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 840.8
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 838.8
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 829.9
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 823.8
GTEX-14BMV-0011-R8a-SM-G9ERM 50-59 years, male 818.8
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 797.1
GTEX-RVPV-0011-R8A-SM-F21II 60-69 years, male 785.2
GTEX-14DAQ-0011-R8a-SM-G9ERP 60-69 years, female 758.4
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 715.0
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 708.5
GTEX-15EO6-0011-R8a-SM-H6Q6R 50-59 years, male 705.8
GTEX-ZZPT-0011-R8a-SM-GQ1CW 50-59 years, male 694.9
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 658.5
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 649.1
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 627.7
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 614.8
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 607.4
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 603.1
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 594.5
GTEX-1LH75-0011-R8b-SM-F2TB2 50-59 years, female 590.3
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 479.0
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 474.3
GTEX-1P4AB-0011-R8a-SM-F341R 50-59 years, male 453.9
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HYPOTHALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2229.9
Pig sample Sample description nTPM
Hypothalamus
nTPM: 2229.9
Samples: 4

Max nTPM: 3022.0
Min nTPM: 1402.1
Sample A Female 3022.0
Sample B Female 2266.9
Sample C Male 2228.4
Sample D Male 1402.1

HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1953.7
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 1953.7
Samples: 4

Max nTPM: 2375.6
Min nTPM: 1750.7
Sample A Male 1844.1
Sample B Male 2375.6
Sample C Female 1750.7
Sample D Female 1844.3

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

27.2
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 27.2
75496213 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 28.8
75457612 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 28.7
75496212 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 28.4
75496215 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 27.4
75496721 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 27.4
75457610 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 27.1
75457611 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 26.4
75496211 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 26.0
75496720 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 25.5
75457613 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 24.2
69120555 Antisense, RP_050330_01_A08, Mouse strain C57BL/6J (56 days, male) 24.1
75492852 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 23.5
75492862 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 23.4
75492865 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 22.1
69117385 Antisense, RP_050330_01_A08, Mouse strain C57BL/6J (56 days, male) 21.6
75492864 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 21.2
75496741 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 21.0
75496731 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 20.8

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