MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.9 nTPM
HPA Brain:62.1 nTPM
GTEx:28.9 nTPM
FANTOM5:264.9 Scaled Tags Per Million
Pig:92.8 nTPM
Mouse:111.9 nTPM
Allen mouse:1.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 62.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.6
1870 Female, age 42, unknown 63.0
2411 Female, age 72, unknown 59.9
2586 Male, age 75, left hemisphere 59.8
2019 Male, age 18, unknown 54.9
1833 Male, age 53, unknown 54.8
1830 Male, age 51, unknown 53.1
2828 Female, age 72, unknown 53.0
1827 Male, age 72, unknown 52.6
2219 Male, age 76, both hemispheres 49.9
2666 Male, age 74, left hemisphere 45.0
Dorsal raphe nucleus
nTPM: 55.5
2750 Male, age 76, both hemispheres 58.1
2047 Male, age 72, unknown 57.9
1828 Male, age 53, unknown 57.1
2298 Female, age 72, unknown 54.9
2016 Female, age 72, unknown 49.6
Inferior colliculus
nTPM: 54.6
1848 Female, age 42, unknown 56.8
2097 Female, age 72, unknown 55.8
2849 Male, age 72, unknown 53.9
1890 Male, age 53, unknown 51.8
Median raphe nucleus
nTPM: 62.1
2220 Male, age 76, midline 62.1
Periaquaductal grey, anterior
nTPM: 54.5
2502 Female, age 75, unknown 59.3
1947 Male, age 18, unknown 54.7
1795 Male, age 51, unknown 49.7
Periaquaductal grey, dorsal
nTPM: 49.5
2850 Male, age 76, both hemispheres 53.5
1840 Male, age 53, unknown 50.7
1831 Male, age 72, unknown 47.3
2464 Female, age 72, unknown 46.6
Periaquaductal grey, lateral
nTPM: 49.2
2272 Male, age 74, both hemispheres 52.3
2053 Male, age 18, unknown 48.5
2140 Male, age 76, both hemispheres 46.9
Pretectal area
nTPM: 52.3
1817 Female, age 42, unknown 63.4
2007 Male, age 72, unknown 56.6
1944 Female, age 72, unknown 56.3
2224 Female, age 72, unknown 55.3
1816 Male, age 51, unknown 54.7
2273 Male, age 74, both hemispheres 51.4
2825 Male, age 18, unknown 51.2
1815 Male, age 53, unknown 50.0
2667 Female, age 75, unknown 48.9
2316 Male, age 76, right hemisphere 45.1
2407 Male, age 75, both hemispheres 42.9
Red nucleus
nTPM: 60.5
1821 Female, age 72, unknown 70.6
1865 Male, age 51, unknown 65.4
1954 Female, age 42, unknown 64.4
2769 Male, age 72, unknown 64.0
2227 Male, age 72, unknown 62.5
2503 Female, age 72, unknown 62.3
2725 Female, age 75, unknown 60.2
2785 Male, age 18, unknown 58.0
2588 Male, age 74, left hemisphere 56.9
1904 Male, age 53, unknown 56.8
2823 Male, age 76, right hemisphere 52.9
2584 Male, age 75, left hemisphere 51.9
Substantia nigra
nTPM: 60.8
1916 Female, age 42, unknown 75.8
1941 Male, age 53, unknown 74.2
1889 Female, age 72, unknown 65.4
1851 Male, age 51, unknown 62.7
2699 Male, age 18, unknown 61.5
2409 Female, age 72, unknown 61.2
2241 Male, age 72, unknown 55.6
2590 Female, age 75, unknown 54.8
2583 Male, age 75, right hemisphere 51.0
2665 Male, age 74, both hemispheres 45.8
Superior colliculus
nTPM: 52.2
2587 Male, age 74, left hemisphere 62.9
2668 Female, age 75, unknown 55.8
1796 Male, age 53, unknown 54.5
1839 Male, age 51, unknown 54.2
2261 Male, age 18, unknown 53.6
1913 Female, age 42, unknown 53.4
1995 Male, age 72, unknown 49.1
2087 Female, age 72, unknown 48.9
1895 Male, age 76, right hemisphere 48.2
2664 Male, age 75, both hemispheres 41.8
Ventral tegmental area
nTPM: 59.5
2410 Female, age 72, unknown 68.3
2223 Female, age 72, unknown 63.8
2218 Male, age 76, both hemispheres 61.0
1915 Female, age 42, unknown 60.2
1942 Male, age 51, unknown 53.5
2021 Male, age 53, unknown 49.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 28.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.9
Samples: 183

Max nTPM: 59.6
Min nTPM: 17.5
Std nTPM: 6.9
Median nTPM: 27.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 59.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 55.3
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 53.3
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 48.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 48.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 45.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 44.4
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 42.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 41.4
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 40.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 40.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 265.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 265.0
FF:10158-103A5 76 years, female 264.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 92.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 81.3
Samples: 4

Max nTPM: 96.9
Min nTPM: 65.3
Sample A Female 96.9
Sample B Female 65.3
Sample C Male 86.0
Sample D Male 77.1
Midbrain
nTPM: 90.8
Samples: 4

Max nTPM: 101.9
Min nTPM: 75.4
Sample A Female 99.6
Sample B Female 75.4
Sample C Male 101.9
Sample D Male 86.4
Periaqueductal gray
nTPM: 74.4
Samples: 3

Max nTPM: 80.0
Min nTPM: 71.3
Sample B Female 71.9
Sample C Male 80.0
Sample D Male 71.3
Superior colliculi
nTPM: 92.8
Samples: 4

Max nTPM: 105.7
Min nTPM: 78.1
Sample A Female 98.4
Sample B Female 78.1
Sample C Male 105.7
Sample D Male 89.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 111.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 111.9
Samples: 4

Max nTPM: 114.6
Min nTPM: 109.4
Sample A Male 110.3
Sample B Male 113.1
Sample C Female 114.6
Sample D Female 109.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
75695663 Antisense, RP_060518_04_D02, Mouse strain C57BL/6J (56 days, male) 1.5

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