A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.5
nTPM
Monaco:
40.3
nTPM
Schmiedel:
167.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.5
HPA sample
nTPM
NK-cell nTPM: 15.5
Samples: 6
Max nTPM: 22.4
Min nTPM: 6.2
P10809_1013
14.8
P10809_1033
6.2
P10809_1052
15.1
P10809_1071
16.8
P10809_1093
17.6
P10809_1103
22.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.3
Monaco sample
nTPM
NK-cell nTPM: 40.3
Samples: 4
Max nTPM: 47.7
Min nTPM: 31.9
RHH5316_R3683
35.1
RHH5224_R3596
46.3
RHH5253_R3625
31.9
RHH5282_R3654
47.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
167.3
Schmiedel sample id
TPM
NK-cell TPM: 167.3
Samples: 90
Max TPM: 329.7
Min TPM: 102.3
NK_1
329.7
NK_2
265.0
NK_3
242.0
NK_4
239.5
NK_5
233.6
NK_6
232.6
NK_7
227.2
NK_8
226.7
NK_9
224.4
NK_10
217.6
NK_11
212.0
NK_12
209.9
NK_13
209.1
NK_14
208.8
NK_15
207.1
NK_16
200.1
NK_17
198.5
NK_18
197.5
NK_19
196.8
NK_20
195.6
NK_21
189.3
NK_22
188.3
NK_23
184.4
NK_24
184.0
NK_25
183.2
NK_26
182.7
NK_27
182.7
NK_28
178.8
NK_29
178.5
NK_30
178.2
NK_31
178.1
NK_32
177.5
NK_33
177.1
NK_34
176.1
NK_35
175.4
NK_36
172.9
NK_37
169.8
NK_38
169.1
NK_39
167.9
NK_40
163.1
NK_41
162.4
NK_42
161.9
NK_43
160.5
NK_44
159.8
NK_45
159.8
NK_46
159.1
NK_47
156.2
NK_48
156.0
NK_49
156.0
NK_50
155.3
NK_51
155.1
NK_52
155.0
NK_53
154.2
NK_54
153.5
NK_55
151.5
NK_56
150.9
NK_57
150.6
NK_58
150.4
NK_59
148.9
NK_60
148.8
NK_61
148.7
NK_62
148.7
NK_63
148.2
NK_64
147.8
NK_65
146.8
NK_66
146.5
NK_67
146.0
NK_68
143.7
NK_69
139.4
NK_70
138.7
NK_71
137.8
NK_72
137.5
NK_73
136.4
NK_74
135.8
NK_75
133.7
NK_76
132.4
NK_77
132.0
NK_78
130.0
NK_79
124.0
NK_80
123.8
NK_81
123.6
NK_82
121.5
NK_83
118.8
NK_84
118.0
NK_85
116.2
NK_86
114.7
NK_87
114.3
NK_88
113.5
NK_89
102.8
NK_90
102.3
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