A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.5
nTPM
Monaco:
12.5
nTPM
Schmiedel:
28.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.5
HPA sample
nTPM
Classical monocyte nTPM: 4.5
Samples: 6
Max nTPM: 5.1
Min nTPM: 3.0
P10809_1003
3.0
P10809_1020
4.5
P10809_1039
5.1
P10809_1058
4.6
P10809_1080
5.1
P10809_1107
4.9
Intermediate monocyte nTPM: 2.5
Samples: 6
Max nTPM: 3.4
Min nTPM: 1.8
P10809_1004
1.8
P10809_1023
2.1
P10809_1042
2.5
P10809_1061
3.4
P10809_1081
2.9
P10809_1108
2.1
Non-classical monocyte nTPM: 2.8
Samples: 5
Max nTPM: 6.6
Min nTPM: 1.3
P10809_1005
1.3
P10809_1053
1.5
P10809_1072
6.6
P10809_1082
2.3
P10809_1109
2.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.5
Monaco sample
nTPM
Classical monocyte nTPM: 12.5
Samples: 4
Max nTPM: 14.4
Min nTPM: 10.4
RHH5313_R3680
10.4
RHH5221_R3593
14.4
RHH5250_R3622
11.5
RHH5279_R3651
13.7
Intermediate monocyte nTPM: 8.3
Samples: 4
Max nTPM: 11.1
Min nTPM: 6.6
RHH5314_R3681
6.6
RHH5222_R3594
11.1
RHH5251_R3623
7.5
RHH5280_R3652
7.9
Non-classical monocyte nTPM: 6.6
Samples: 4
Max nTPM: 7.0
Min nTPM: 5.8
RHH5315_R3682
6.7
RHH5223_R3595
5.8
RHH5252_R3624
6.8
RHH5281_R3653
7.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.3
Schmiedel sample id
TPM
Classical monocyte TPM: 28.3
Samples: 91
Max TPM: 40.8
Min TPM: 15.1
MONOCYTES_1
40.8
MONOCYTES_2
40.0
MONOCYTES_3
40.0
MONOCYTES_4
38.9
MONOCYTES_5
37.7
MONOCYTES_6
37.5
MONOCYTES_7
37.4
MONOCYTES_8
37.2
MONOCYTES_9
37.2
MONOCYTES_10
35.9
MONOCYTES_11
35.9
MONOCYTES_12
34.6
MONOCYTES_13
34.5
MONOCYTES_14
34.3
MONOCYTES_15
34.1
MONOCYTES_16
33.9
MONOCYTES_17
33.9
MONOCYTES_18
33.1
MONOCYTES_19
33.0
MONOCYTES_20
32.6
MONOCYTES_21
32.4
MONOCYTES_22
32.3
MONOCYTES_23
32.3
MONOCYTES_24
32.3
MONOCYTES_25
32.2
MONOCYTES_26
32.0
MONOCYTES_27
32.0
MONOCYTES_28
31.4
MONOCYTES_29
30.9
MONOCYTES_30
30.8
MONOCYTES_31
30.8
MONOCYTES_32
30.7
MONOCYTES_33
30.6
MONOCYTES_34
30.6
MONOCYTES_35
30.4
MONOCYTES_36
30.2
MONOCYTES_37
30.1
MONOCYTES_38
30.1
MONOCYTES_39
30.1
MONOCYTES_40
29.8
MONOCYTES_41
29.7
MONOCYTES_42
29.6
MONOCYTES_43
29.4
MONOCYTES_44
29.2
MONOCYTES_45
28.9
MONOCYTES_46
28.7
MONOCYTES_47
28.6
MONOCYTES_48
28.5
MONOCYTES_49
28.2
MONOCYTES_50
28.1
MONOCYTES_51
28.0
MONOCYTES_52
28.0
MONOCYTES_53
27.9
MONOCYTES_54
27.9
MONOCYTES_55
27.7
MONOCYTES_56
27.4
MONOCYTES_57
26.7
MONOCYTES_58
26.5
MONOCYTES_59
26.1
MONOCYTES_60
26.1
MONOCYTES_61
25.9
MONOCYTES_62
25.8
MONOCYTES_63
25.6
MONOCYTES_64
25.6
MONOCYTES_65
25.2
MONOCYTES_66
25.2
MONOCYTES_67
24.2
MONOCYTES_68
23.7
MONOCYTES_69
23.6
MONOCYTES_70
22.7
MONOCYTES_71
22.4
MONOCYTES_72
22.4
MONOCYTES_73
22.4
MONOCYTES_74
22.2
MONOCYTES_75
21.6
MONOCYTES_76
21.4
MONOCYTES_77
21.4
MONOCYTES_78
21.4
MONOCYTES_79
21.0
MONOCYTES_80
20.9
MONOCYTES_81
20.8
MONOCYTES_82
20.8
MONOCYTES_83
20.3
MONOCYTES_84
19.5
MONOCYTES_85
19.2
MONOCYTES_86
18.8
MONOCYTES_87
18.8
MONOCYTES_88
17.7
MONOCYTES_89
16.8
MONOCYTES_90
16.5
MONOCYTES_91
15.1
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Non-classical monocyte TPM: 21.5
Samples: 90
Max TPM: 29.2
Min TPM: 14.3
M2_1
29.2
M2_2
28.3
M2_3
28.2
M2_4
28.0
M2_5
28.0
M2_6
27.7
M2_7
27.3
M2_8
27.0
M2_9
26.8
M2_10
26.3
M2_11
25.9
M2_12
25.9
M2_13
25.8
M2_14
25.5
M2_15
25.3
M2_16
25.0
M2_17
24.6
M2_18
24.5
M2_19
24.4
M2_20
24.4
M2_21
24.0
M2_22
24.0
M2_23
23.8
M2_24
23.6
M2_25
23.5
M2_26
23.1
M2_27
23.1
M2_28
23.0
M2_29
22.9
M2_30
22.9
M2_31
22.8
M2_32
22.7
M2_33
22.5
M2_34
22.4
M2_35
22.4
M2_36
22.3
M2_37
22.2
M2_38
22.2
M2_39
22.2
M2_40
22.2
M2_41
22.2
M2_42
22.0
M2_43
21.6
M2_44
21.5
M2_45
21.5
M2_46
21.2
M2_47
21.0
M2_48
20.9
M2_49
20.9
M2_50
20.8
M2_51
20.7
M2_52
20.6
M2_53
20.6
M2_54
20.5
M2_55
20.4
M2_56
20.2
M2_57
20.2
M2_58
20.1
M2_59
19.9
M2_60
19.9
M2_61
19.8
M2_62
19.8
M2_63
19.5
M2_64
19.5
M2_65
19.2
M2_66
19.1
M2_67
19.1
M2_68
19.0
M2_69
19.0
M2_70
19.0
M2_71
18.8
M2_72
18.8
M2_73
18.8
M2_74
18.6
M2_75
18.6
M2_76
18.3
M2_77
18.2
M2_78
18.1
M2_79
17.7
M2_80
17.4
M2_81
17.1
M2_82
16.6
M2_83
16.3
M2_84
16.1
M2_85
16.1
M2_86
15.5
M2_87
14.4
M2_88
14.3
M2_89
14.3
M2_90
14.3
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