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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
259.0
Sample id
Sample description
nTPM
Amygdala nTPM: 210.1
2814
Male, age 76, right hemisphere
357.6
1987
Female, age 91, left hemisphere
269.6
2517
Female, age 94, left hemisphere
186.7
2514
Male, age 75, right hemisphere
127.2
2695
Female, age 67, right hemisphere
109.4
Basal amygdala nTPM: 256.5
2243
Female, age 91, right hemisphere
418.7
2685
Female, age 94, left hemisphere
301.0
1955
Male, age 76, both hemispheres
278.7
2110
Male, age 80, left hemisphere
264.0
2827
Female, age 67, right hemisphere
147.1
2609
Male, age 75, right hemisphere
129.6
Central amygdala nTPM: 254.7
1905
Male, age 76, both hemispheres
316.7
2826
Female, age 94, left hemisphere
304.0
2239
Male, age 80, left hemisphere
281.9
2701
Female, age 91, right hemisphere
245.2
2515
Male, age 75, right hemisphere
125.6
Corticomedial amygdala nTPM: 259.0
2242
Female, age 91, right hemisphere
349.5
2829
Male, age 80, left hemisphere
348.7
2240
Male, age 76, both hemispheres
270.3
2429
Female, age 94, left hemisphere
268.0
2535
Female, age 67, right hemisphere
204.8
2428
Male, age 75, right hemisphere
112.7
Lateral amygdala nTPM: 225.0
2534
Female, age 94, left hemisphere
447.3
1883
Male, age 76, both hemispheres
316.8
2255
Female, age 91, right hemisphere
235.1
2256
Male, age 80, left hemisphere
177.6
2516
Male, age 75, right hemisphere
92.9
2830
Female, age 67, right hemisphere
80.1
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
169.7
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 169.7
Samples: 181
Max nTPM: 648.6
Min nTPM: 23.8
Std nTPM: 109.1
Median nTPM: 141.5
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
648.6
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
627.5
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
514.5
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
424.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
418.9
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
415.1
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
411.4
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
396.3
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
375.7
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
374.5
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
361.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
343.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
341.3
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
333.0
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
331.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
331.2
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
327.1
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
324.3
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
305.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
304.6
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
303.1
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
301.3
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
286.4
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
283.9
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
283.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
279.8
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
275.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
274.2
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
265.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
263.6
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
262.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
258.0
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
256.1
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
256.0
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
255.0
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
243.9
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
243.1
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
241.2
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
239.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
238.7
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
237.5
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
235.2
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
234.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
233.1
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
228.7
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
226.5
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
226.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
223.9
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
223.8
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
219.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
216.7
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
215.6
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
214.1
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
213.7
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
210.2
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
206.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
203.5
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
202.8
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
201.0
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
199.8
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
199.1
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
199.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
198.3
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
196.9
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
195.0
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
193.8
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
192.9
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
192.7
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
185.6
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
185.1
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
181.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
178.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
176.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
171.8
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
170.4
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
165.8
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
163.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
161.5
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
161.5
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
160.9
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
158.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
156.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
155.4
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
155.1
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
154.2
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
151.8
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
150.0
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
146.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
144.5
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
142.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
141.5
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
140.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
139.0
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
136.4
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
136.0
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
135.8
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
134.1
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
133.7
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
133.4
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
132.0
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
130.2
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
129.9
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
129.2
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
128.5
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
127.8
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
124.1
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
123.2
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
122.7
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
121.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
120.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
119.7
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
117.3
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
115.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
114.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
112.9
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
112.4
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
111.9
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
111.5
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
111.3
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
108.9
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
108.9
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
106.7
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
105.0
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
103.0
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
102.9
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
102.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
100.0
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
97.3
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
96.6
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
96.2
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
92.0
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
89.3
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
89.1
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
88.5
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
84.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
82.6
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
82.1
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
80.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
79.1
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
77.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
77.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
75.8
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
75.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
75.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
74.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
74.9
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
74.5
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
74.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
71.5
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
71.1
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
70.6
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
70.4
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
69.8
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
67.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
67.3
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
67.3
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
65.5
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
65.2
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
63.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
62.9
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
61.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
57.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
57.2
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
56.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
56.2
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
54.0
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
52.6
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
50.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
50.8
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
48.5
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
45.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
44.5
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
39.7
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
39.4
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
39.3
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
39.1
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
37.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
33.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
29.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
28.9
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
23.8
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
259.9
Pig sample
Sample description
nTPM
Amygdala nTPM: 259.9
Samples: 4
Max nTPM: 434.5
Min nTPM: 156.5
Sample A
Female
434.5
Sample B
Female
156.5
Sample C
Male
205.1
Sample D
Male
243.5
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1017.4
Mouse sample
Sample description
nTPM
Amygdala nTPM: 1017.4
Samples: 4
Max nTPM: 1091.2
Min nTPM: 951.7
Sample A
Male
1091.2
Sample B
Male
951.7
Sample C
Female
1019.7
Sample D
Female
1006.9
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
