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BETA
  • SUMMARY

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  • BRAIN

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  • SYP
EVOLUTIONARY RETINA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Protein evolution
Eye
Evolutionary methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:288.2 nTPM
GTEx:288.2 nTPM
FANTOM5:204.1 Scaled Tags Per Million
Macaque:328.9 nTPM
Mouse:662.3 nTPM
Rat:320.0 nTPM
Pig:341.7 nTPM
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

288.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 288.2
Samples: 105

Max nTPM: 452.2
Min nTPM: 78.4
Std nTPM: 75.8
Median nTPM:
163_1 78 years, male 452.2
377_1 82 years, female 431.1
352_1 62 years, male 409.5
425_1 59 years, female 406.7
316_1 62 years, male 405.5
319_1 81 years, male 401.3
229_1 69 years, female 393.1
376_1 75 years, female 386.6
386_1 76 years, male 381.5
335_1 73 years, female 380.7
177_1 74 years, male 380.0
218_1 71 years, female 377.8
246_1 77 years, male 375.1
237_1 82 years, male 372.4
322_1 76 years, male 372.3
243_1 75 years, male 364.9
321_1 62 years, female 363.6
406_1 79 years, male 363.3
172_1 72 years, female 362.9
251_1 78 years, male 362.8
286_1 68 years, female 359.0
320_1 89 years, female 357.4
217_1 76 years, male 355.0
350_1 84 years, female 353.9
292_1 71 years, male 350.3
379_1 60 years, male 348.5
6_1 73 years, female 348.2
293_1 68 years, female 348.2
354_1 81 years, female 347.4
503_1 68 years, male 346.1
375_1 74 years, female 342.6
189_1 76 years, male 338.8
389_1 86 years, female 334.6
318_1 68 years, male 331.0
518_1 75 years, female 326.7
526_1 61 years, male 326.0
394_1 75 years, female 324.0
353_1 82 years, female 323.2
405_1 91 years, male 323.0
265_1 87 years, male 315.0
266_1 85 years, male 314.0
447_1 81 years, male 313.8
404_1 82 years, female 309.4
517_1 88 years, male 309.1
468_1 89 years, male 307.8
254_1 77 years, female 307.7
349_1 83 years, male 307.0
480_1 63 years, male 306.5
355_1 70 years, female 306.2
153_1 70 years, female 298.0
356_1 87 years, female 297.5
506_1 65 years, male 296.8
264_1 73 years, female 295.2
351_1 91 years, male 291.8
17_1 71 years, male 287.7
2_1 77 years, female 286.3
396_1 62 years, male 284.5
291_1 76 years, male 284.4
347_1 72 years, male 281.4
499_1 55 years, female 277.0
384_1 83 years, male 276.6
35_1 74 years, female 275.8
313_1 79 years, female 275.2
348_1 84 years, male 272.3
115_1 83 years, male 270.4
295_1 61 years, female 267.3
452_1 88 years, female 266.4
18_1 88 years, male 265.3
324_1 76 years, male 265.3
9_1 66 years, female 264.0
4_1 88 years, female 262.6
137_1 83 years, male 256.5
126_1 63 years, male 256.3
145_1 84 years, male 252.5
173_1 67 years, male 247.5
288_1 66 years, female 246.3
311_1 78 years, male 243.7
315_1 62 years, female 242.5
109_1 81 years, female 234.5
314_1 67 years, male 234.5
317_1 60 years, male 230.6
120_1 70 years, female 223.5
43_1 64 years, female 220.2
142_1 61 years, female 214.1
307_1 66 years, female 213.5
415_1 77 years, female 213.1
117_1 61 years, male 211.9
99_1 64 years, male 211.0
139_1 64 years, female 208.2
162_1 79 years, female 204.3
466_1 57 years, female 202.4
41_1 94 years, female 201.2
414_1 84 years, female 199.8
81_1 67 years, male 198.1
42_1 85 years, male 192.0
32_1 67 years, male 187.5
501_1 88 years, male 179.9
495_1 57 years, female 165.9
149_1 88 years, male 151.6
89_1 63 years, male 148.7
413_1 59 years, female 146.9
119_1 70 years, female 143.2
308_1 70 years, female 124.2
490_1 67 years, female 106.8
491_1 89 years, female 78.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

204.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 204.1
FF:10030-101E3 24-65 years, mixed 204.1

RETINA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

328.9
Macaque sample Sample description nTPM
Retina
nTPM: 328.9
Samples: 2

Max nTPM: 387.8
Min nTPM: 269.9
Sample A 269.9
Sample B 387.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

341.7
Pig sample Sample description nTPM
Retina
nTPM: 341.7
Samples: 4

Max nTPM: 374.2
Min nTPM: 306.3
Sample A Female 337.3
Sample B Female 348.9
Sample C Male 374.2
Sample D Male 306.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

662.3
Mouse sample Sample description nTPM
Retina
nTPM: 662.3
Samples: 3

Max nTPM: 693.7
Min nTPM: 605.4
Sample D 693.7
Sample B 687.8
Sample C 605.4

RETINA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

320.0
Rat sample Sample description nTPM
Retina
nTPM: 320.0
Samples: 4

Max nTPM: 325.5
Min nTPM: 314.0
Sample B 325.5
Sample A 317.7
Sample A 314.0
Sample A 322.6

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