Evolutionary view of SYP across human, pig, rat, mouse and macaque - Staining in thalamus

THALAMUS - Expression summary

Mouse brain, Intensity
Thalamusⁱ

133.095

RNA expressionⁱ

HPA Brain:	374.0	nTPM
FANTOM5:	81.1	Scaled Tags Per Million

Macaque:	251.9	nTPM
Mouse:	625.6	nTPM
Rat:	589.1	nTPM
Pig:	370.1	nTPM

BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

THALAMUS - Mouse brain profileⁱ Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity. , antibody CAB078999
Thalamus mean intensity	133.095
	intensityⁱ Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.	FRONT BACK
Medial geniculate nucleus	52.632
Parafascicular thalamic nucleus	66.541
Pregeniculate nucleus	87.842
Stria terminalis	40.377
Zona incerta	133.095
Anterodorsal thalamic nucleus	27.072
Reticular thalamic nucleus	23.724
Vental anterior thalamic nucleus	41.185
Medial habenular nucleus	33.504
Laterodorsal thalamic area	59.782
Paraventricular thalamic nucleus	64.208
Central medial thalamic area	63.918
Ventral lateral thalamic area	-
Ventral medial thalamic area	94.623
Lateral habenulal nucleus	28.168
Ventral posterior thalamus	22.010
Anterior pretactal nucleus	34.354
Retromammillary nucleus	107.150

THALAMUS - HPA Brain RNA-seq

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	374.0

Sample id

Sample description

nTPM

Anterior thalamic nucleus, ventral
nTPM: 202.2

2032	Female, age 42, unknown	257.4
2497	Male, age 66, unknown	188.9
2396	Male, age 61, right hemisphere	160.1

Centromedial thalamic nucleus
nTPM: 185.2

2401	Male, age 76, right hemisphere	330.8
2279	Female, age 85, left hemisphere	39.5

Habenula
nTPM: 374.0

2203	Male, age 61, left hemisphere	472.6
1957	Male, age 80, both hemispheres	457.1
2276	Male, age 66, unknown	344.0
2252	Male, age 62, unknown	222.3

Lateral geniculate body
nTPM: 293.1

2106	Female, age 67, right hemisphere	722.8
1953	Male, age 62, unknown	398.2
2399	Male, age 61, left hemisphere	382.0
2035	Female, age 72, unknown	286.2
2841	Male, age 80, both hemispheres	160.5
2857	Male, age 74, right hemisphere	153.7
2659	Male, age 66, unknown	144.4
2575	Female, age 94, right hemisphere	97.1

Lateral thalamic nuclei
nTPM: 245.5

2577	Male, age 74, both hemispheres	325.7
1903	Male, age 76, left hemisphere	323.4
2765	Female, age 67, both hemispheres	295.6
2661	Female, age 72, unknown	161.2
2573	Female, age 94, left hemisphere	121.5

Medial dorsal thalamic nucleus
nTPM: 295.9

2498	Male, age 66, unknown	504.3
1971	Male, age 61, right hemisphere	456.2
2283	Male, age 80, right hemisphere	372.1
1859	Male, age 76, both hemispheres	331.3
2026	Male, age 62, unknown	328.8
1810	Male, age 48, unknown	305.5
2576	Male, age 74, both hemispheres	274.5
1930	Female, age 42, unknown	255.2
2492	Male, age 75, right hemisphere	254.9
2402	Female, age 67, both hemispheres	240.0
2039	Female, age 72, unknown	217.9
2660	Female, age 72, unknown	172.3
2572	Female, age 94, right hemisphere	134.3

Medial geniculate body
nTPM: 206.9

1811	Female, age 42, unknown	353.5
2207	Male, age 80, right hemisphere	250.6
2217	Female, age 72, unknown	195.9
2657	Male, age 74, right hemisphere	183.2
2049	Male, age 76, both hemispheres	168.2
2650	Female, age 94, left hemisphere	160.7
2571	Male, age 75, right hemisphere	136.2

Nucleus reuniens
nTPM: 232.2

2212	Female, age 67, left hemisphere	445.2
2205	Male, age 80, left hemisphere	166.0
2210	Female, age 85, left hemisphere	85.5

Nucleus rhomboideus
nTPM: 198.8

2206	Male, age 80, both hemispheres	389.1
2213	Female, age 67, left hemisphere	107.4
2280	Female, age 85, left hemisphere	99.9

Posterior thalamic nucleus
nTPM: 204.6

2266	Male, age 76, right hemisphere	325.3
2495	Female, age 67, right hemisphere	230.0
2655	Male, age 74, right hemisphere	165.4
2649	Female, age 94, both hemispheres	97.6

Pulvinar
nTPM: 288.5

1972	Male, age 62, unknown	390.6
2398	Male, age 61, left hemisphere	376.4
2496	Female, age 67, right hemisphere	337.5
1932	Male, age 80, right hemisphere	333.8
2214	Male, age 76, right hemisphere	288.8
1929	Male, age 48, unknown	282.1
1899	Female, age 42, unknown	260.2
2582	Female, age 72, unknown	246.3
2724	Male, age 74, right hemisphere	198.7
2499	Male, age 66, unknown	171.1

Subthalamic nucleus
nTPM: 199.8

2406	Female, age 72, unknown	278.1
2275	Male, age 66, unknown	272.3
2658	Male, age 74, both hemispheres	227.5
2282	Male, age 61, both hemispheres	203.0
2124	Male, age 62, unknown	195.6
2779	Female, age 42, unknown	174.8
2216	Male, age 48, unknown	132.1
2056	Female, age 72, unknown	114.7

Ventral posterolateral thalamic nucleus
nTPM: 262.2

2740	Male, age 76, right hemisphere	344.7
2197	Male, age 80, both hemispheres	326.9
2578	Male, age 74, both hemispheres	321.0
2397	Male, age 61, right hemisphere	301.7
2581	Female, age 72, unknown	147.7
2570	Male, age 75, right hemisphere	131.3

Ventral posteromedial thalamic nucleus
nTPM: 297.7

2202	Male, age 61, left hemisphere	434.1
2653	Male, age 74, both hemispheres	381.9
2758	Male, age 80, both hemispheres	344.9
2127	Male, age 76, right hemisphere	202.4
2281	Male, age 75, right hemisphere	125.3

Ventral thalamic nuclei
nTPM: 236.9

1860	Male, age 76, both hemispheres	318.8
1845	Male, age 48, unknown	299.6
1912	Female, age 42, unknown	275.4
2285	Male, age 62, unknown	275.4
2652	Male, age 74, left hemisphere	261.1
2204	Male, age 80, both hemispheres	217.7
2858	Female, age 72, unknown	188.1
2291	Female, age 72, unknown	158.9
2580	Male, age 66, unknown	137.0

Zona incerta
nTPM: 180.7

2208	Male, age 80, right hemisphere	238.4
2215	Male, age 66, unknown	187.9
2663	Female, age 72, unknown	180.4
2822	Male, age 74, right hemisphere	170.9
2403	Male, age 62, unknown	125.9

THALAMUS - FANTOM5 CAGEⁱ

Max subtype Scaled Tags Per Millionⁱ Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.	81.1

FANTOM5 sample id

Sample description

Scaled Tags Per Million

Thalamus
Scaled Tags Per Million: 81.1

FF:10154-103A1

76 years, female

81.1

THALAMUS - Macaque RNA-seq

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	251.9

Macaque sample

Sample description

nTPM

Habenula
nTPM: 123.8

Samples: 1

Max nTPM: 123.8
Min nTPM: 123.8

Sample A

123.8

Lateral thalamic nuclei
nTPM: 204.7

Samples: 2

Max nTPM: 217.1
Min nTPM: 192.3

Sample A		217.1
Sample B		192.3

Thalamus
nTPM: 251.9

Samples: 2

Max nTPM: 331.1
Min nTPM: 172.6

Sample A		331.1
Sample B		172.6

THALAMUS - Pig RNA-seqⁱ

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	370.1

Pig sample

Sample description

nTPM

Thalamus
nTPM: 370.1

Samples: 3

Max nTPM: 596.9
Min nTPM: 124.9

Sample A	Female	596.9
Sample C	Male	388.5
Sample D	Male	124.9

THALAMUS - Mouse RNA-seqⁱ

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	625.6

Mouse sample

Sample description

nTPM

Thalamus
nTPM: 625.6

Samples: 4

Max nTPM: 720.8
Min nTPM: 501.5

Sample A		501.5
Sample B		720.8
Sample C		605.8
Sample D		674.2

THALAMUS - Rat RNA-seq

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	589.1

Rat sample

Sample description

nTPM

Thalamus
nTPM: 589.1

Samples: 4

Max nTPM: 639.5
Min nTPM: 543.9

Sample A		543.9
Sample A		639.5
Sample A		607.1
Sample A		565.8