On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
18.8
nTPM
HPA Brain:
14.9
nTPM
GTEx:
18.8
nTPM
FANTOM5:
30.4
Scaled Tags Per Million
Macaque:
20.6
nTPM
Mouse:
3.6
nTPM
Pig:
79.6
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
9162
Sample
Intensity
Spinal cord_01
25991
Spinal cord_02
ND
Spinal cord_03
14878
Spinal cord_04
9162
Spinal cord_05
7550
Spinal cord_06
22259
Spinal cord_07
6742
Spinal cord_08
5646
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.9
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 12.1
2818
Female, age 79, both hemispheres
16.2
2819
Male, age 47, both hemispheres
12.6
2193
Male, age 75, both hemispheres
9.9
2734
Male, age 80, both hemispheres
9.8
Cervical spinal cord, central gray nTPM: 14.9
2048
Male, age 55, midline
18.3
1981
Female, age 72, midline
17.9
2565
Male, age 75, midline
15.1
2816
Male, age 47, midline
13.0
2194
Female, age 79, both hemispheres
10.0
Cervical spinal cord, dorsal horn nTPM: 10.2
2173
Female, age 72, unknown
13.7
2721
Male, age 90, both hemispheres
11.6
2069
Male, age 47, both hemispheres
11.2
1877
Male, age 55, unknown
10.2
2296
Male, age 66, both hemispheres
8.6
2297
Male, age 75, both hemispheres
5.8
Cervical spinal cord, ventral horn nTPM: 12.1
2098
Female, age 72, unknown
23.0
2809
Male, age 90, both hemispheres
16.7
2295
Male, age 66, both hemispheres
11.4
2480
Male, age 75, both hemispheres
8.1
2068
Male, age 55, unknown
7.1
2820
Female, age 79, both hemispheres
6.2
Dorsal funiculus (white matter) nTPM: 11.8
2064
Female, age 79, both hemispheres
18.8
2128
Male, age 75, both hemispheres
11.8
2817
Male, age 47, both hemispheres
10.6
2812
Male, age 66, both hemispheres
9.7
2810
Male, age 90, both hemispheres
8.2
Lateral funiculus (white matter) nTPM: 13.7
2294
Male, age 66, both hemispheres
17.0
2094
Female, age 79, both hemispheres
16.7
2192
Male, age 75, both hemispheres
10.8
2099
Male, age 90, both hemispheres
10.2
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
18.8
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 18.8
Samples: 204
Max nTPM: 111.6
Min nTPM: 6.0
Std nTPM: 11.7
Median nTPM: 16.0
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
111.6
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
68.2
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
62.5
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
54.4
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
48.4
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
48.4
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
47.0
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
45.3
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
42.4
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
39.7
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
38.9
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
37.6
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
36.1
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
34.2
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
34.1
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
33.8
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
33.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
32.6
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
31.4
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
31.3
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
30.5
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
30.1
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
28.3
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
27.5
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
27.1
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
26.9
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
26.3
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
25.9
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
25.9
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
25.8
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
25.7
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
25.6
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
25.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
25.1
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
25.0
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
24.8
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
24.6
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
24.4
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
24.2
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
23.8
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
23.6
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
23.6
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
23.5
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
23.5
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
22.9
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
22.8
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
22.6
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
22.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
22.0
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
21.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
21.4
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
21.3
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
21.1
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
21.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
20.9
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
20.7
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
20.7
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
20.5
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
20.4
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
20.4
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
20.2
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
20.2
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
20.1
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
20.1
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
20.1
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
20.0
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
20.0
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
19.5
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
19.3
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
19.1
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
18.9
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
18.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
18.8
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
18.7
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
18.4
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
18.3
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
18.3
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
18.2
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
17.8
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
17.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
17.5
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
17.5
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
17.4
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
17.4
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
17.2
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
17.2
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
17.2
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
16.9
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
16.9
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
16.7
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
16.6
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
16.3
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
16.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
16.3
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
16.3
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
16.3
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
16.1
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
16.1
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
16.1
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
16.1
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
16.0
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
16.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
16.0
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
16.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
15.8
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
15.7
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
15.7
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
15.7
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
15.7
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
15.5
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
15.4
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
15.2
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
15.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
15.2
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
15.2
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
15.1
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
14.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
14.9
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
14.9
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
14.8
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
14.7
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
14.6
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
14.5
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
14.3
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
14.3
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
14.3
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
14.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
14.2
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
14.1
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
13.8
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
13.7
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
13.6
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
13.5
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
13.5
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
13.4
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
13.3
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
13.3
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
13.0
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
13.0
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
13.0
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
12.7
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
12.7
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
12.6
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
12.6
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
12.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
12.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
12.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
12.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
12.3
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
12.2
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
12.1
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
12.0
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
11.9
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
11.8
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
11.8
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
11.7
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
11.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
11.6
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
11.5
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
11.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
11.5
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
11.5
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
11.3
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
11.1
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
11.1
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
11.0
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
11.0
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
10.9
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
10.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
10.8
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
10.6
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
10.4
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
10.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
10.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
10.4
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
10.3
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
10.2
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
10.2
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
10.2
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
10.1
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
10.0
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
10.0
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
9.8
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
9.6
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
9.6
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
9.2
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
9.2
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
9.1
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
9.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
8.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
8.4
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
8.3
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
8.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
8.1
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
7.6
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
7.6
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
7.5
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
7.4
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
7.4
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
6.7
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
6.5
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
6.3
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
6.2
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
6.0
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
20.6
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 11.7
Samples: 2
Max nTPM: 13.4
Min nTPM: 9.9
Sample A
9.9
Sample B
13.4
Ventral spinal cord nTPM: 20.6
Samples: 1
Max nTPM: 20.6
Min nTPM: 20.6
Sample A
20.6
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
79.6
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 76.2
Samples: 4
Max nTPM: 101.4
Min nTPM: 50.3
Sample A
Female
50.3
Sample B
Female
82.5
Sample C
Male
101.4
Sample D
Male
70.7
Ventral spinal cord nTPM: 79.6
Samples: 4
Max nTPM: 98.4
Min nTPM: 66.6
Sample A
Female
66.6
Sample B
Female
69.1
Sample C
Male
84.4
Sample D
Male
98.4
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3.6
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 3.6
Samples: 4
Max nTPM: 4.2
Min nTPM: 3.1
Sample A
3.5
Sample B
3.4
Sample C
4.2
Sample D
3.1
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The Human Protein Atlas project is funded
