A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
227.2
nTPM
Monaco:
275.1
nTPM
Schmiedel:
179.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
227.2
HPA sample
nTPM
Memory B-cell nTPM: 227.2
Samples: 6
Max nTPM: 307.3
Min nTPM: 124.4
P10809_1017
266.0
P10809_1025
307.3
P10809_1044
124.4
P10809_1063
228.8
P10809_1092
233.2
P10809_1105
203.5
Naive B-cell nTPM: 145.4
Samples: 6
Max nTPM: 230.0
Min nTPM: 97.7
P10809_1011
112.1
P10809_1029
167.0
P10809_1048
230.0
P10809_1067
129.7
P10809_1091
135.8
P10809_1104
97.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
275.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 248.2
Samples: 4
Max nTPM: 335.9
Min nTPM: 161.0
RHH5310_R3677
324.0
RHH5218_R3590
172.0
RHH5247_R3619
335.9
RHH5276_R3648
161.0
Naive B-cell nTPM: 149.8
Samples: 4
Max nTPM: 209.6
Min nTPM: 112.4
RHH5308_R3675
209.6
RHH5216_R3588
147.9
RHH5245_R3617
112.4
RHH5274_R3646
129.1
Non-switched memory B-cell nTPM: 206.9
Samples: 4
Max nTPM: 266.4
Min nTPM: 143.7
RHH5309_R3676
255.6
RHH5217_R3589
162.0
RHH5246_R3618
266.4
RHH5275_R3647
143.7
Plasmablast nTPM: 140.0
Samples: 4
Max nTPM: 180.5
Min nTPM: 114.4
RHH5312_R3679
144.7
RHH5220_R3592
114.4
RHH5249_R3621
180.5
RHH5278_R3650
120.3
Switched memory B-cell nTPM: 275.2
Samples: 4
Max nTPM: 431.9
Min nTPM: 191.3
RHH5311_R3678
431.9
RHH5219_R3591
245.7
RHH5248_R3620
231.7
RHH5277_R3649
191.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
179.6
Schmiedel sample id
TPM
Naive B-cell TPM: 179.6
Samples: 91
Max TPM: 239.9
Min TPM: 79.3
B_CELL_NAIVE_1
239.9
B_CELL_NAIVE_2
239.5
B_CELL_NAIVE_3
236.7
B_CELL_NAIVE_4
236.7
B_CELL_NAIVE_5
218.4
B_CELL_NAIVE_6
217.6
B_CELL_NAIVE_7
216.7
B_CELL_NAIVE_8
213.9
B_CELL_NAIVE_9
213.7
B_CELL_NAIVE_10
212.8
B_CELL_NAIVE_11
212.2
B_CELL_NAIVE_12
209.0
B_CELL_NAIVE_13
206.6
B_CELL_NAIVE_14
206.3
B_CELL_NAIVE_15
203.5
B_CELL_NAIVE_16
202.1
B_CELL_NAIVE_17
201.8
B_CELL_NAIVE_18
201.5
B_CELL_NAIVE_19
201.5
B_CELL_NAIVE_20
199.7
B_CELL_NAIVE_21
198.9
B_CELL_NAIVE_22
197.3
B_CELL_NAIVE_23
197.2
B_CELL_NAIVE_24
195.8
B_CELL_NAIVE_25
192.9
B_CELL_NAIVE_26
192.6
B_CELL_NAIVE_27
192.4
B_CELL_NAIVE_28
191.6
B_CELL_NAIVE_29
190.6
B_CELL_NAIVE_30
189.7
B_CELL_NAIVE_31
189.6
B_CELL_NAIVE_32
188.4
B_CELL_NAIVE_33
188.3
B_CELL_NAIVE_34
187.2
B_CELL_NAIVE_35
187.0
B_CELL_NAIVE_36
186.9
B_CELL_NAIVE_37
185.7
B_CELL_NAIVE_38
185.5
B_CELL_NAIVE_39
185.4
B_CELL_NAIVE_40
185.2
B_CELL_NAIVE_41
184.2
B_CELL_NAIVE_42
183.5
B_CELL_NAIVE_43
183.5
B_CELL_NAIVE_44
181.6
B_CELL_NAIVE_45
181.3
B_CELL_NAIVE_46
181.0
B_CELL_NAIVE_47
180.0
B_CELL_NAIVE_48
179.2
B_CELL_NAIVE_49
179.0
B_CELL_NAIVE_50
177.9
B_CELL_NAIVE_51
176.8
B_CELL_NAIVE_52
176.4
B_CELL_NAIVE_53
174.7
B_CELL_NAIVE_54
173.9
B_CELL_NAIVE_55
173.8
B_CELL_NAIVE_56
173.7
B_CELL_NAIVE_57
173.7
B_CELL_NAIVE_58
172.3
B_CELL_NAIVE_59
171.9
B_CELL_NAIVE_60
170.1
B_CELL_NAIVE_61
169.8
B_CELL_NAIVE_62
167.0
B_CELL_NAIVE_63
166.6
B_CELL_NAIVE_64
166.5
B_CELL_NAIVE_65
166.4
B_CELL_NAIVE_66
164.2
B_CELL_NAIVE_67
163.8
B_CELL_NAIVE_68
163.4
B_CELL_NAIVE_69
163.3
B_CELL_NAIVE_70
163.0
B_CELL_NAIVE_71
162.6
B_CELL_NAIVE_72
162.1
B_CELL_NAIVE_73
161.8
B_CELL_NAIVE_74
160.9
B_CELL_NAIVE_75
159.9
B_CELL_NAIVE_76
159.1
B_CELL_NAIVE_77
157.1
B_CELL_NAIVE_78
156.8
B_CELL_NAIVE_79
156.0
B_CELL_NAIVE_80
154.8
B_CELL_NAIVE_81
149.3
B_CELL_NAIVE_82
146.3
B_CELL_NAIVE_83
145.3
B_CELL_NAIVE_84
142.9
B_CELL_NAIVE_85
140.0
B_CELL_NAIVE_86
138.8
B_CELL_NAIVE_87
137.0
B_CELL_NAIVE_88
132.1
B_CELL_NAIVE_89
129.6
B_CELL_NAIVE_90
114.0
B_CELL_NAIVE_91
79.3
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