A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
288.2
nTPM
Monaco:
300.7
nTPM
Schmiedel:
724.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
288.2
HPA sample
nTPM
Classical monocyte nTPM: 288.2
Samples: 6
Max nTPM: 476.8
Min nTPM: 183.8
P10809_1003
476.8
P10809_1020
315.5
P10809_1039
261.5
P10809_1058
270.3
P10809_1080
221.1
P10809_1107
183.8
Intermediate monocyte nTPM: 99.9
Samples: 6
Max nTPM: 122.5
Min nTPM: 62.8
P10809_1004
99.4
P10809_1023
108.6
P10809_1042
116.2
P10809_1061
122.5
P10809_1081
89.9
P10809_1108
62.8
Non-classical monocyte nTPM: 64.0
Samples: 5
Max nTPM: 84.6
Min nTPM: 49.7
P10809_1005
79.5
P10809_1053
84.6
P10809_1072
49.7
P10809_1082
53.2
P10809_1109
52.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
300.7
Monaco sample
nTPM
Classical monocyte nTPM: 300.7
Samples: 4
Max nTPM: 384.7
Min nTPM: 155.9
RHH5313_R3680
304.2
RHH5221_R3593
155.9
RHH5250_R3622
384.7
RHH5279_R3651
358.0
Intermediate monocyte nTPM: 91.4
Samples: 4
Max nTPM: 136.9
Min nTPM: 52.0
RHH5314_R3681
136.9
RHH5222_R3594
52.0
RHH5251_R3623
68.8
RHH5280_R3652
108.0
Non-classical monocyte nTPM: 48.3
Samples: 4
Max nTPM: 76.1
Min nTPM: 26.7
RHH5315_R3682
76.1
RHH5223_R3595
26.7
RHH5252_R3624
35.9
RHH5281_R3653
54.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
724.9
Schmiedel sample id
TPM
Classical monocyte TPM: 724.9
Samples: 91
Max TPM: 933.8
Min TPM: 368.4
MONOCYTES_1
933.8
MONOCYTES_2
874.1
MONOCYTES_3
862.5
MONOCYTES_4
856.0
MONOCYTES_5
849.5
MONOCYTES_6
827.0
MONOCYTES_7
826.7
MONOCYTES_8
824.9
MONOCYTES_9
817.2
MONOCYTES_10
813.4
MONOCYTES_11
802.0
MONOCYTES_12
795.4
MONOCYTES_13
794.8
MONOCYTES_14
794.0
MONOCYTES_15
792.5
MONOCYTES_16
791.8
MONOCYTES_17
787.6
MONOCYTES_18
785.2
MONOCYTES_19
782.4
MONOCYTES_20
780.5
MONOCYTES_21
779.6
MONOCYTES_22
778.8
MONOCYTES_23
777.7
MONOCYTES_24
775.8
MONOCYTES_25
770.0
MONOCYTES_26
769.2
MONOCYTES_27
760.1
MONOCYTES_28
759.9
MONOCYTES_29
758.7
MONOCYTES_30
758.6
MONOCYTES_31
758.2
MONOCYTES_32
757.4
MONOCYTES_33
757.1
MONOCYTES_34
755.7
MONOCYTES_35
755.6
MONOCYTES_36
752.9
MONOCYTES_37
752.7
MONOCYTES_38
752.3
MONOCYTES_39
751.7
MONOCYTES_40
750.1
MONOCYTES_41
749.9
MONOCYTES_42
745.0
MONOCYTES_43
742.5
MONOCYTES_44
738.1
MONOCYTES_45
734.6
MONOCYTES_46
733.3
MONOCYTES_47
732.5
MONOCYTES_48
730.7
MONOCYTES_49
727.2
MONOCYTES_50
726.4
MONOCYTES_51
726.3
MONOCYTES_52
724.8
MONOCYTES_53
722.9
MONOCYTES_54
722.0
MONOCYTES_55
716.8
MONOCYTES_56
714.1
MONOCYTES_57
712.0
MONOCYTES_58
709.8
MONOCYTES_59
707.5
MONOCYTES_60
705.6
MONOCYTES_61
705.4
MONOCYTES_62
704.4
MONOCYTES_63
700.6
MONOCYTES_64
698.9
MONOCYTES_65
697.8
MONOCYTES_66
694.8
MONOCYTES_67
692.3
MONOCYTES_68
689.1
MONOCYTES_69
684.8
MONOCYTES_70
684.4
MONOCYTES_71
683.3
MONOCYTES_72
683.0
MONOCYTES_73
676.6
MONOCYTES_74
675.5
MONOCYTES_75
670.4
MONOCYTES_76
667.7
MONOCYTES_77
659.5
MONOCYTES_78
632.9
MONOCYTES_79
626.3
MONOCYTES_80
625.4
MONOCYTES_81
624.2
MONOCYTES_82
613.6
MONOCYTES_83
609.5
MONOCYTES_84
609.2
MONOCYTES_85
600.3
MONOCYTES_86
588.9
MONOCYTES_87
580.6
MONOCYTES_88
569.5
MONOCYTES_89
564.4
MONOCYTES_90
534.4
MONOCYTES_91
368.4
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Non-classical monocyte TPM: 159.3
Samples: 90
Max TPM: 286.4
Min TPM: 73.6
M2_1
286.4
M2_2
275.7
M2_3
246.1
M2_4
242.4
M2_5
229.4
M2_6
227.7
M2_7
217.8
M2_8
209.5
M2_9
205.4
M2_10
204.7
M2_11
202.1
M2_12
201.9
M2_13
197.7
M2_14
197.0
M2_15
194.4
M2_16
193.6
M2_17
192.4
M2_18
189.4
M2_19
189.1
M2_20
188.4
M2_21
185.0
M2_22
183.7
M2_23
183.1
M2_24
180.9
M2_25
180.8
M2_26
179.8
M2_27
177.1
M2_28
176.1
M2_29
175.8
M2_30
174.4
M2_31
171.9
M2_32
170.7
M2_33
169.6
M2_34
162.0
M2_35
161.8
M2_36
161.5
M2_37
161.4
M2_38
158.4
M2_39
158.1
M2_40
155.8
M2_41
154.3
M2_42
153.6
M2_43
153.2
M2_44
152.6
M2_45
152.2
M2_46
151.7
M2_47
149.8
M2_48
149.5
M2_49
149.1
M2_50
147.8
M2_51
146.7
M2_52
146.3
M2_53
146.2
M2_54
145.1
M2_55
145.0
M2_56
144.8
M2_57
142.5
M2_58
142.1
M2_59
142.1
M2_60
140.8
M2_61
140.1
M2_62
139.7
M2_63
138.9
M2_64
137.3
M2_65
136.1
M2_66
134.9
M2_67
134.1
M2_68
133.3
M2_69
132.2
M2_70
131.0
M2_71
128.1
M2_72
127.9
M2_73
127.8
M2_74
126.4
M2_75
126.3
M2_76
124.9
M2_77
121.1
M2_78
118.8
M2_79
118.3
M2_80
117.9
M2_81
117.8
M2_82
117.6
M2_83
117.4
M2_84
116.5
M2_85
113.8
M2_86
108.9
M2_87
106.7
M2_88
104.1
M2_89
94.5
M2_90
73.6
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