A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
89.4
nTPM
Monaco:
218.4
nTPM
Schmiedel:
109.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
89.4
HPA sample
nTPM
NK-cell nTPM: 89.4
Samples: 6
Max nTPM: 110.5
Min nTPM: 45.1
P10809_1013
69.7
P10809_1033
94.9
P10809_1052
108.1
P10809_1071
107.9
P10809_1093
45.1
P10809_1103
110.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
218.4
Monaco sample
nTPM
NK-cell nTPM: 218.5
Samples: 4
Max nTPM: 239.6
Min nTPM: 208.6
RHH5316_R3683
208.6
RHH5224_R3596
239.6
RHH5253_R3625
209.0
RHH5282_R3654
216.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
109.2
Schmiedel sample id
TPM
NK-cell TPM: 109.2
Samples: 90
Max TPM: 158.6
Min TPM: 73.1
NK_1
158.6
NK_2
152.6
NK_3
143.7
NK_4
141.9
NK_5
140.5
NK_6
139.6
NK_7
136.7
NK_8
133.8
NK_9
131.4
NK_10
131.2
NK_11
127.7
NK_12
127.7
NK_13
127.1
NK_14
126.2
NK_15
126.0
NK_16
125.4
NK_17
124.4
NK_18
123.6
NK_19
122.8
NK_20
122.6
NK_21
121.9
NK_22
120.4
NK_23
120.1
NK_24
119.9
NK_25
119.8
NK_26
119.7
NK_27
119.6
NK_28
119.3
NK_29
118.1
NK_30
117.8
NK_31
117.0
NK_32
116.8
NK_33
116.5
NK_34
115.3
NK_35
114.8
NK_36
114.4
NK_37
113.8
NK_38
110.5
NK_39
110.4
NK_40
109.7
NK_41
109.5
NK_42
109.5
NK_43
108.9
NK_44
108.3
NK_45
107.9
NK_46
107.5
NK_47
105.7
NK_48
105.4
NK_49
105.1
NK_50
103.8
NK_51
103.3
NK_52
102.8
NK_53
102.5
NK_54
102.3
NK_55
102.3
NK_56
102.2
NK_57
101.9
NK_58
101.8
NK_59
101.7
NK_60
101.5
NK_61
100.3
NK_62
99.9
NK_63
99.7
NK_64
97.6
NK_65
96.9
NK_66
96.3
NK_67
96.1
NK_68
96.0
NK_69
95.2
NK_70
94.7
NK_71
94.0
NK_72
93.8
NK_73
93.7
NK_74
93.6
NK_75
93.5
NK_76
91.0
NK_77
90.5
NK_78
89.5
NK_79
89.5
NK_80
89.4
NK_81
88.9
NK_82
88.0
NK_83
88.0
NK_84
86.3
NK_85
86.3
NK_86
85.9
NK_87
82.7
NK_88
82.7
NK_89
81.0
NK_90
73.1
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