A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
112.3
nTPM
Monaco:
195.7
nTPM
Schmiedel:
67.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
112.3
HPA sample
nTPM
Classical monocyte nTPM: 45.4
Samples: 6
Max nTPM: 65.4
Min nTPM: 34.1
P10809_1003
34.1
P10809_1020
56.7
P10809_1039
65.4
P10809_1058
39.2
P10809_1080
40.3
P10809_1107
36.6
Intermediate monocyte nTPM: 79.7
Samples: 6
Max nTPM: 113.8
Min nTPM: 57.7
P10809_1004
80.9
P10809_1023
84.4
P10809_1042
113.8
P10809_1061
77.8
P10809_1081
63.3
P10809_1108
57.7
Non-classical monocyte nTPM: 112.3
Samples: 5
Max nTPM: 159.4
Min nTPM: 81.7
P10809_1005
102.9
P10809_1053
120.1
P10809_1072
159.4
P10809_1082
81.7
P10809_1109
97.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
195.7
Monaco sample
nTPM
Classical monocyte nTPM: 100.1
Samples: 4
Max nTPM: 108.2
Min nTPM: 94.8
RHH5313_R3680
96.9
RHH5221_R3593
100.5
RHH5250_R3622
108.2
RHH5279_R3651
94.8
Intermediate monocyte nTPM: 147.9
Samples: 4
Max nTPM: 161.3
Min nTPM: 139.1
RHH5314_R3681
149.8
RHH5222_R3594
141.4
RHH5251_R3623
139.1
RHH5280_R3652
161.3
Non-classical monocyte nTPM: 195.7
Samples: 4
Max nTPM: 222.8
Min nTPM: 152.7
RHH5315_R3682
222.8
RHH5223_R3595
152.7
RHH5252_R3624
205.1
RHH5281_R3653
202.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.8
Schmiedel sample id
TPM
Classical monocyte TPM: 30.5
Samples: 91
Max TPM: 39.2
Min TPM: 23.5
MONOCYTES_1
39.2
MONOCYTES_2
36.9
MONOCYTES_3
36.5
MONOCYTES_4
36.4
MONOCYTES_5
35.8
MONOCYTES_6
35.8
MONOCYTES_7
35.7
MONOCYTES_8
35.3
MONOCYTES_9
35.2
MONOCYTES_10
34.7
MONOCYTES_11
34.6
MONOCYTES_12
34.3
MONOCYTES_13
34.1
MONOCYTES_14
34.0
MONOCYTES_15
33.9
MONOCYTES_16
33.5
MONOCYTES_17
33.5
MONOCYTES_18
33.4
MONOCYTES_19
33.2
MONOCYTES_20
33.2
MONOCYTES_21
33.2
MONOCYTES_22
33.1
MONOCYTES_23
33.0
MONOCYTES_24
33.0
MONOCYTES_25
32.7
MONOCYTES_26
32.4
MONOCYTES_27
32.3
MONOCYTES_28
32.1
MONOCYTES_29
32.1
MONOCYTES_30
31.8
MONOCYTES_31
31.8
MONOCYTES_32
31.7
MONOCYTES_33
31.7
MONOCYTES_34
31.6
MONOCYTES_35
31.6
MONOCYTES_36
31.6
MONOCYTES_37
31.5
MONOCYTES_38
31.2
MONOCYTES_39
31.0
MONOCYTES_40
31.0
MONOCYTES_41
30.7
MONOCYTES_42
30.5
MONOCYTES_43
30.4
MONOCYTES_44
30.3
MONOCYTES_45
30.3
MONOCYTES_46
30.3
MONOCYTES_47
30.1
MONOCYTES_48
29.9
MONOCYTES_49
29.9
MONOCYTES_50
29.8
MONOCYTES_51
29.7
MONOCYTES_52
29.7
MONOCYTES_53
29.7
MONOCYTES_54
29.5
MONOCYTES_55
29.5
MONOCYTES_56
29.4
MONOCYTES_57
29.4
MONOCYTES_58
29.3
MONOCYTES_59
29.2
MONOCYTES_60
28.7
MONOCYTES_61
28.6
MONOCYTES_62
28.5
MONOCYTES_63
28.5
MONOCYTES_64
28.5
MONOCYTES_65
28.4
MONOCYTES_66
28.4
MONOCYTES_67
28.4
MONOCYTES_68
28.2
MONOCYTES_69
28.1
MONOCYTES_70
28.0
MONOCYTES_71
28.0
MONOCYTES_72
27.8
MONOCYTES_73
27.8
MONOCYTES_74
27.7
MONOCYTES_75
27.7
MONOCYTES_76
27.5
MONOCYTES_77
27.4
MONOCYTES_78
27.4
MONOCYTES_79
27.3
MONOCYTES_80
27.2
MONOCYTES_81
27.0
MONOCYTES_82
26.8
MONOCYTES_83
26.1
MONOCYTES_84
25.9
MONOCYTES_85
25.9
MONOCYTES_86
25.7
MONOCYTES_87
25.3
MONOCYTES_88
24.9
MONOCYTES_89
24.8
MONOCYTES_90
24.0
MONOCYTES_91
23.5
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Non-classical monocyte TPM: 67.8
Samples: 90
Max TPM: 94.3
Min TPM: 48.0
M2_1
94.3
M2_2
88.4
M2_3
87.0
M2_4
85.7
M2_5
83.4
M2_6
80.6
M2_7
80.6
M2_8
80.5
M2_9
79.7
M2_10
78.5
M2_11
78.5
M2_12
78.4
M2_13
77.7
M2_14
77.7
M2_15
76.7
M2_16
76.4
M2_17
76.1
M2_18
75.7
M2_19
75.0
M2_20
74.8
M2_21
74.6
M2_22
73.9
M2_23
73.7
M2_24
73.5
M2_25
72.9
M2_26
72.4
M2_27
72.3
M2_28
71.7
M2_29
71.7
M2_30
71.5
M2_31
71.3
M2_32
69.9
M2_33
69.6
M2_34
69.5
M2_35
69.1
M2_36
68.6
M2_37
68.5
M2_38
68.4
M2_39
68.4
M2_40
68.2
M2_41
68.0
M2_42
67.9
M2_43
67.8
M2_44
67.7
M2_45
67.4
M2_46
67.3
M2_47
66.8
M2_48
66.2
M2_49
66.2
M2_50
65.5
M2_51
65.4
M2_52
65.3
M2_53
65.0
M2_54
64.6
M2_55
64.5
M2_56
64.2
M2_57
64.1
M2_58
64.1
M2_59
63.8
M2_60
63.7
M2_61
63.7
M2_62
63.6
M2_63
63.5
M2_64
62.9
M2_65
62.8
M2_66
62.5
M2_67
62.3
M2_68
61.3
M2_69
61.2
M2_70
60.9
M2_71
59.6
M2_72
58.9
M2_73
58.9
M2_74
58.3
M2_75
58.0
M2_76
57.9
M2_77
57.6
M2_78
57.6
M2_79
57.2
M2_80
57.1
M2_81
57.0
M2_82
57.0
M2_83
56.7
M2_84
56.5
M2_85
56.0
M2_86
55.9
M2_87
55.8
M2_88
55.4
M2_89
54.3
M2_90
48.0
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