MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.5 nTPM
HPA Brain:38.6 nTPM
GTEx:53.5 nTPM
FANTOM5:48.7 Scaled Tags Per Million
Pig:32.8 nTPM
Mouse:112.6 nTPM
Allen mouse:1.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 38.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.3
1827 Male, age 72, unknown 36.1
2411 Female, age 72, unknown 36.1
1833 Male, age 53, unknown 34.5
2019 Male, age 18, unknown 33.8
1870 Female, age 42, unknown 33.0
2586 Male, age 75, left hemisphere 30.4
2219 Male, age 76, both hemispheres 30.3
1830 Male, age 51, unknown 30.0
2828 Female, age 72, unknown 30.0
2666 Male, age 74, left hemisphere 28.5
Dorsal raphe nucleus
nTPM: 34.8
2298 Female, age 72, unknown 37.9
2047 Male, age 72, unknown 37.8
2750 Male, age 76, both hemispheres 36.6
1828 Male, age 53, unknown 32.0
2016 Female, age 72, unknown 29.7
Inferior colliculus
nTPM: 30.5
2849 Male, age 72, unknown 33.2
2097 Female, age 72, unknown 32.4
1848 Female, age 42, unknown 28.5
1890 Male, age 53, unknown 27.7
Median raphe nucleus
nTPM: 38.6
2220 Male, age 76, midline 38.6
Periaquaductal grey, anterior
nTPM: 34.1
2502 Female, age 75, unknown 36.5
1795 Male, age 51, unknown 33.8
1947 Male, age 18, unknown 31.9
Periaquaductal grey, dorsal
nTPM: 31.1
2850 Male, age 76, both hemispheres 34.5
1840 Male, age 53, unknown 32.0
2464 Female, age 72, unknown 30.3
1831 Male, age 72, unknown 27.4
Periaquaductal grey, lateral
nTPM: 33.4
2272 Male, age 74, both hemispheres 37.7
2053 Male, age 18, unknown 31.4
2140 Male, age 76, both hemispheres 31.2
Pretectal area
nTPM: 34.0
1817 Female, age 42, unknown 38.6
1944 Female, age 72, unknown 37.6
1816 Male, age 51, unknown 35.7
2224 Female, age 72, unknown 35.6
2007 Male, age 72, unknown 34.3
2273 Male, age 74, both hemispheres 34.2
1815 Male, age 53, unknown 33.9
2407 Male, age 75, both hemispheres 31.9
2825 Male, age 18, unknown 31.4
2667 Female, age 75, unknown 31.3
2316 Male, age 76, right hemisphere 28.8
Red nucleus
nTPM: 32.1
2785 Male, age 18, unknown 35.6
1865 Male, age 51, unknown 33.7
1821 Female, age 72, unknown 33.5
2725 Female, age 75, unknown 33.4
2227 Male, age 72, unknown 32.5
1904 Male, age 53, unknown 31.8
2503 Female, age 72, unknown 31.7
2584 Male, age 75, left hemisphere 31.7
2769 Male, age 72, unknown 31.4
1954 Female, age 42, unknown 31.1
2823 Male, age 76, right hemisphere 29.9
2588 Male, age 74, left hemisphere 28.8
Substantia nigra
nTPM: 33.6
1889 Female, age 72, unknown 39.8
1916 Female, age 42, unknown 39.7
1851 Male, age 51, unknown 39.1
2699 Male, age 18, unknown 34.1
1941 Male, age 53, unknown 33.7
2590 Female, age 75, unknown 31.3
2665 Male, age 74, both hemispheres 31.2
2241 Male, age 72, unknown 29.8
2409 Female, age 72, unknown 29.5
2583 Male, age 75, right hemisphere 28.1
Superior colliculus
nTPM: 32.3
2087 Female, age 72, unknown 35.1
2587 Male, age 74, left hemisphere 34.8
1796 Male, age 53, unknown 33.9
1913 Female, age 42, unknown 33.3
2668 Female, age 75, unknown 33.1
2261 Male, age 18, unknown 32.9
1895 Male, age 76, right hemisphere 32.3
1995 Male, age 72, unknown 30.1
1839 Male, age 51, unknown 29.9
2664 Male, age 75, both hemispheres 27.1
Ventral tegmental area
nTPM: 34.6
2410 Female, age 72, unknown 37.9
1915 Female, age 42, unknown 34.9
2021 Male, age 53, unknown 34.8
2218 Male, age 76, both hemispheres 34.7
2223 Female, age 72, unknown 34.3
1942 Male, age 51, unknown 30.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 53.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.5
Samples: 183

Max nTPM: 108.9
Min nTPM: 29.9
Std nTPM: 11.2
Median nTPM: 52.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 108.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 85.5
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 81.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 80.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 79.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 76.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 76.3
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 73.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 73.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 72.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 72.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 48.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.7
FF:10158-103A5 76 years, female 48.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.4
Samples: 4

Max nTPM: 38.5
Min nTPM: 23.8
Sample A Female 38.5
Sample B Female 23.8
Sample C Male 36.4
Sample D Male 26.7
Midbrain
nTPM: 32.5
Samples: 4

Max nTPM: 41.2
Min nTPM: 27.2
Sample A Female 41.2
Sample B Female 27.2
Sample C Male 32.1
Sample D Male 29.6
Periaqueductal gray
nTPM: 25.3
Samples: 3

Max nTPM: 29.0
Min nTPM: 23.2
Sample B Female 23.2
Sample C Male 29.0
Sample D Male 23.8
Superior colliculi
nTPM: 32.8
Samples: 4

Max nTPM: 35.1
Min nTPM: 27.1
Sample A Female 35.1
Sample B Female 27.1
Sample C Male 34.9
Sample D Male 34.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 112.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 112.6
Samples: 4

Max nTPM: 116.8
Min nTPM: 108.5
Sample A Male 113.7
Sample B Male 111.3
Sample C Female 116.8
Sample D Female 108.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
68269676 Antisense, RP_041129_02_A07, Mouse strain C57BL/6J (56 days, male) 3.0
1520 Antisense, RP_Baylor_103203, Mouse strain C57BL/6J (56 days, male) 0.0
70919758 Antisense, RP_050713_02_A05, Mouse strain C57BL/6J (56 days, male) 0.0

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