MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:195.0 nTPM
HPA Brain:126.8 nTPM
GTEx:195.0 nTPM
FANTOM5:313.3 Scaled Tags Per Million
Pig:106.6 nTPM
Mouse:34.4 nTPM
Allen mouse:3.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 126.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.7
1870 Female, age 42, unknown 107.4
2411 Female, age 72, unknown 99.4
1827 Male, age 72, unknown 98.0
2219 Male, age 76, both hemispheres 89.0
2666 Male, age 74, left hemisphere 88.2
1833 Male, age 53, unknown 85.9
1830 Male, age 51, unknown 84.7
2019 Male, age 18, unknown 74.8
2828 Female, age 72, unknown 68.1
2586 Male, age 75, left hemisphere 61.5
Dorsal raphe nucleus
nTPM: 89.9
2750 Male, age 76, both hemispheres 106.6
2298 Female, age 72, unknown 95.3
2047 Male, age 72, unknown 87.1
1828 Male, age 53, unknown 83.4
2016 Female, age 72, unknown 77.1
Inferior colliculus
nTPM: 100.3
2849 Male, age 72, unknown 113.5
2097 Female, age 72, unknown 103.0
1848 Female, age 42, unknown 93.5
1890 Male, age 53, unknown 91.4
Median raphe nucleus
nTPM: 126.8
2220 Male, age 76, midline 126.8
Periaquaductal grey, anterior
nTPM: 98.1
1947 Male, age 18, unknown 109.3
2502 Female, age 75, unknown 96.5
1795 Male, age 51, unknown 88.6
Periaquaductal grey, dorsal
nTPM: 99.0
2850 Male, age 76, both hemispheres 110.9
1840 Male, age 53, unknown 108.2
1831 Male, age 72, unknown 89.2
2464 Female, age 72, unknown 87.6
Periaquaductal grey, lateral
nTPM: 85.8
2140 Male, age 76, both hemispheres 89.4
2053 Male, age 18, unknown 86.2
2272 Male, age 74, both hemispheres 82.0
Pretectal area
nTPM: 99.3
1944 Female, age 72, unknown 119.1
2224 Female, age 72, unknown 110.9
2007 Male, age 72, unknown 107.1
1817 Female, age 42, unknown 104.0
1816 Male, age 51, unknown 103.9
2825 Male, age 18, unknown 99.9
1815 Male, age 53, unknown 98.4
2667 Female, age 75, unknown 91.8
2407 Male, age 75, both hemispheres 88.8
2273 Male, age 74, both hemispheres 86.9
2316 Male, age 76, right hemisphere 81.5
Red nucleus
nTPM: 84.1
1821 Female, age 72, unknown 99.6
1954 Female, age 42, unknown 92.8
2725 Female, age 75, unknown 91.0
2503 Female, age 72, unknown 90.2
2823 Male, age 76, right hemisphere 89.3
1865 Male, age 51, unknown 84.1
1904 Male, age 53, unknown 82.5
2227 Male, age 72, unknown 79.9
2769 Male, age 72, unknown 78.8
2785 Male, age 18, unknown 76.8
2584 Male, age 75, left hemisphere 76.2
2588 Male, age 74, left hemisphere 67.9
Substantia nigra
nTPM: 97.4
1889 Female, age 72, unknown 112.6
1916 Female, age 42, unknown 111.6
1941 Male, age 53, unknown 110.4
2241 Male, age 72, unknown 107.3
2409 Female, age 72, unknown 100.0
2699 Male, age 18, unknown 99.2
1851 Male, age 51, unknown 97.1
2590 Female, age 75, unknown 82.6
2665 Male, age 74, both hemispheres 78.2
2583 Male, age 75, right hemisphere 74.8
Superior colliculus
nTPM: 89.5
2668 Female, age 75, unknown 103.8
1895 Male, age 76, right hemisphere 102.1
2587 Male, age 74, left hemisphere 97.0
2087 Female, age 72, unknown 95.7
2261 Male, age 18, unknown 93.5
1796 Male, age 53, unknown 91.5
1839 Male, age 51, unknown 91.4
1913 Female, age 42, unknown 81.9
1995 Male, age 72, unknown 70.2
2664 Male, age 75, both hemispheres 68.1
Ventral tegmental area
nTPM: 97.9
2218 Male, age 76, both hemispheres 108.0
1915 Female, age 42, unknown 101.0
1942 Male, age 51, unknown 98.2
2223 Female, age 72, unknown 96.3
2410 Female, age 72, unknown 95.8
2021 Male, age 53, unknown 88.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 195.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 195.0
Samples: 183

Max nTPM: 379.9
Min nTPM: 74.7
Std nTPM: 47.3
Median nTPM: 194.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 379.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 339.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 330.0
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 298.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 289.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 286.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 285.8
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 285.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 276.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 273.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 268.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 313.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 313.3
FF:10158-103A5 76 years, female 313.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 106.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 101.9
Samples: 4

Max nTPM: 134.1
Min nTPM: 62.1
Sample A Female 134.1
Sample B Female 77.3
Sample C Male 133.9
Sample D Male 62.1
Midbrain
nTPM: 103.5
Samples: 4

Max nTPM: 109.5
Min nTPM: 98.5
Sample A Female 109.5
Sample B Female 100.8
Sample C Male 98.5
Sample D Male 105.0
Periaqueductal gray
nTPM: 106.6
Samples: 3

Max nTPM: 136.7
Min nTPM: 89.2
Sample B Female 94.0
Sample C Male 136.7
Sample D Male 89.2
Superior colliculi
nTPM: 94.9
Samples: 4

Max nTPM: 110.0
Min nTPM: 84.2
Sample A Female 110.0
Sample B Female 84.2
Sample C Male 99.6
Sample D Male 85.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 34.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.4
Samples: 4

Max nTPM: 37.5
Min nTPM: 32.0
Sample A Male 37.5
Sample B Male 33.5
Sample C Female 32.0
Sample D Female 34.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
69201534 Antisense, RP_050317_03_B02, Mouse strain C57BL/6J (56 days, male) 3.5

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