A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
161.8
nTPM
Monaco:
439.7
nTPM
Schmiedel:
414.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
161.8
HPA sample
nTPM
Memory B-cell nTPM: 161.8
Samples: 6
Max nTPM: 206.7
Min nTPM: 124.5
P10809_1017
129.7
P10809_1025
167.4
P10809_1044
171.4
P10809_1063
124.5
P10809_1092
206.7
P10809_1105
171.0
Naive B-cell nTPM: 156.3
Samples: 6
Max nTPM: 199.9
Min nTPM: 101.6
P10809_1011
141.5
P10809_1029
150.3
P10809_1048
199.9
P10809_1067
101.6
P10809_1091
175.7
P10809_1104
168.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
439.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 212.3
Samples: 4
Max nTPM: 267.9
Min nTPM: 144.9
RHH5310_R3677
144.9
RHH5218_R3590
267.9
RHH5247_R3619
226.0
RHH5276_R3648
210.3
Naive B-cell nTPM: 390.7
Samples: 4
Max nTPM: 480.5
Min nTPM: 279.4
RHH5308_R3675
279.4
RHH5216_R3588
480.5
RHH5245_R3617
453.6
RHH5274_R3646
349.3
Non-switched memory B-cell nTPM: 439.7
Samples: 4
Max nTPM: 507.1
Min nTPM: 312.9
RHH5309_R3676
312.9
RHH5217_R3589
507.1
RHH5246_R3618
497.5
RHH5275_R3647
441.4
Plasmablast nTPM: 72.7
Samples: 4
Max nTPM: 102.4
Min nTPM: 46.8
RHH5312_R3679
51.7
RHH5220_R3592
102.4
RHH5249_R3621
89.8
RHH5278_R3650
46.8
Switched memory B-cell nTPM: 275.9
Samples: 4
Max nTPM: 346.7
Min nTPM: 188.1
RHH5311_R3678
188.1
RHH5219_R3591
346.7
RHH5248_R3620
275.4
RHH5277_R3649
293.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
414.6
Schmiedel sample id
TPM
Naive B-cell TPM: 414.6
Samples: 91
Max TPM: 573.2
Min TPM: 217.5
B_CELL_NAIVE_1
573.2
B_CELL_NAIVE_2
563.9
B_CELL_NAIVE_3
520.0
B_CELL_NAIVE_4
517.6
B_CELL_NAIVE_5
510.9
B_CELL_NAIVE_6
504.3
B_CELL_NAIVE_7
502.1
B_CELL_NAIVE_8
500.5
B_CELL_NAIVE_9
495.3
B_CELL_NAIVE_10
493.0
B_CELL_NAIVE_11
487.4
B_CELL_NAIVE_12
483.5
B_CELL_NAIVE_13
482.0
B_CELL_NAIVE_14
479.7
B_CELL_NAIVE_15
477.6
B_CELL_NAIVE_16
475.2
B_CELL_NAIVE_17
469.4
B_CELL_NAIVE_18
465.2
B_CELL_NAIVE_19
464.3
B_CELL_NAIVE_20
460.0
B_CELL_NAIVE_21
459.3
B_CELL_NAIVE_22
458.0
B_CELL_NAIVE_23
457.9
B_CELL_NAIVE_24
455.9
B_CELL_NAIVE_25
451.6
B_CELL_NAIVE_26
451.0
B_CELL_NAIVE_27
446.6
B_CELL_NAIVE_28
445.4
B_CELL_NAIVE_29
444.3
B_CELL_NAIVE_30
442.7
B_CELL_NAIVE_31
440.6
B_CELL_NAIVE_32
437.2
B_CELL_NAIVE_33
437.1
B_CELL_NAIVE_34
436.0
B_CELL_NAIVE_35
433.3
B_CELL_NAIVE_36
433.2
B_CELL_NAIVE_37
431.9
B_CELL_NAIVE_38
431.9
B_CELL_NAIVE_39
426.2
B_CELL_NAIVE_40
424.4
B_CELL_NAIVE_41
423.6
B_CELL_NAIVE_42
423.3
B_CELL_NAIVE_43
423.3
B_CELL_NAIVE_44
421.9
B_CELL_NAIVE_45
421.7
B_CELL_NAIVE_46
420.4
B_CELL_NAIVE_47
420.2
B_CELL_NAIVE_48
416.3
B_CELL_NAIVE_49
414.9
B_CELL_NAIVE_50
411.2
B_CELL_NAIVE_51
410.9
B_CELL_NAIVE_52
405.3
B_CELL_NAIVE_53
404.4
B_CELL_NAIVE_54
403.7
B_CELL_NAIVE_55
400.9
B_CELL_NAIVE_56
400.5
B_CELL_NAIVE_57
398.9
B_CELL_NAIVE_58
397.6
B_CELL_NAIVE_59
391.9
B_CELL_NAIVE_60
391.6
B_CELL_NAIVE_61
387.6
B_CELL_NAIVE_62
382.8
B_CELL_NAIVE_63
382.6
B_CELL_NAIVE_64
382.4
B_CELL_NAIVE_65
381.2
B_CELL_NAIVE_66
380.9
B_CELL_NAIVE_67
379.5
B_CELL_NAIVE_68
377.8
B_CELL_NAIVE_69
377.6
B_CELL_NAIVE_70
375.4
B_CELL_NAIVE_71
368.9
B_CELL_NAIVE_72
368.3
B_CELL_NAIVE_73
365.5
B_CELL_NAIVE_74
364.0
B_CELL_NAIVE_75
363.7
B_CELL_NAIVE_76
359.0
B_CELL_NAIVE_77
352.9
B_CELL_NAIVE_78
351.2
B_CELL_NAIVE_79
349.5
B_CELL_NAIVE_80
338.8
B_CELL_NAIVE_81
332.1
B_CELL_NAIVE_82
327.5
B_CELL_NAIVE_83
322.9
B_CELL_NAIVE_84
321.7
B_CELL_NAIVE_85
318.4
B_CELL_NAIVE_86
317.5
B_CELL_NAIVE_87
317.3
B_CELL_NAIVE_88
315.1
B_CELL_NAIVE_89
308.2
B_CELL_NAIVE_90
266.7
B_CELL_NAIVE_91
217.5
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