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BETA
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IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:161.8 nTPM
Monaco:439.7 nTPM
Schmiedel:414.6 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

161.8
HPA sample nTPM
Memory B-cell
nTPM: 161.8
Samples: 6

Max nTPM: 206.7
Min nTPM: 124.5
P10809_1017 129.7
P10809_1025 167.4
P10809_1044 171.4
P10809_1063 124.5
P10809_1092 206.7
P10809_1105 171.0
Naive B-cell
nTPM: 156.3
Samples: 6

Max nTPM: 199.9
Min nTPM: 101.6
P10809_1011 141.5
P10809_1029 150.3
P10809_1048 199.9
P10809_1067 101.6
P10809_1091 175.7
P10809_1104 168.5

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

439.7
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 212.3
Samples: 4

Max nTPM: 267.9
Min nTPM: 144.9
RHH5310_R3677 144.9
RHH5218_R3590 267.9
RHH5247_R3619 226.0
RHH5276_R3648 210.3
Naive B-cell
nTPM: 390.7
Samples: 4

Max nTPM: 480.5
Min nTPM: 279.4
RHH5308_R3675 279.4
RHH5216_R3588 480.5
RHH5245_R3617 453.6
RHH5274_R3646 349.3
Non-switched memory B-cell
nTPM: 439.7
Samples: 4

Max nTPM: 507.1
Min nTPM: 312.9
RHH5309_R3676 312.9
RHH5217_R3589 507.1
RHH5246_R3618 497.5
RHH5275_R3647 441.4
Plasmablast
nTPM: 72.7
Samples: 4

Max nTPM: 102.4
Min nTPM: 46.8
RHH5312_R3679 51.7
RHH5220_R3592 102.4
RHH5249_R3621 89.8
RHH5278_R3650 46.8
Switched memory B-cell
nTPM: 275.9
Samples: 4

Max nTPM: 346.7
Min nTPM: 188.1
RHH5311_R3678 188.1
RHH5219_R3591 346.7
RHH5248_R3620 275.4
RHH5277_R3649 293.5

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

414.6
Schmiedel sample id TPM
Naive B-cell
TPM: 414.6
Samples: 91

Max TPM: 573.2
Min TPM: 217.5
B_CELL_NAIVE_1 573.2
B_CELL_NAIVE_2 563.9
B_CELL_NAIVE_3 520.0
B_CELL_NAIVE_4 517.6
B_CELL_NAIVE_5 510.9
B_CELL_NAIVE_6 504.3
B_CELL_NAIVE_7 502.1
B_CELL_NAIVE_8 500.5
B_CELL_NAIVE_9 495.3
B_CELL_NAIVE_10 493.0
B_CELL_NAIVE_11 487.4
B_CELL_NAIVE_12 483.5
B_CELL_NAIVE_13 482.0
B_CELL_NAIVE_14 479.7
B_CELL_NAIVE_15 477.6
B_CELL_NAIVE_16 475.2
B_CELL_NAIVE_17 469.4
B_CELL_NAIVE_18 465.2
B_CELL_NAIVE_19 464.3
B_CELL_NAIVE_20 460.0
B_CELL_NAIVE_21 459.3
B_CELL_NAIVE_22 458.0
B_CELL_NAIVE_23 457.9
B_CELL_NAIVE_24 455.9
B_CELL_NAIVE_25 451.6
B_CELL_NAIVE_26 451.0
B_CELL_NAIVE_27 446.6
B_CELL_NAIVE_28 445.4
B_CELL_NAIVE_29 444.3
B_CELL_NAIVE_30 442.7
B_CELL_NAIVE_31 440.6
B_CELL_NAIVE_32 437.2
B_CELL_NAIVE_33 437.1
B_CELL_NAIVE_34 436.0
B_CELL_NAIVE_35 433.3
B_CELL_NAIVE_36 433.2
B_CELL_NAIVE_37 431.9
B_CELL_NAIVE_38 431.9
B_CELL_NAIVE_39 426.2
B_CELL_NAIVE_40 424.4
B_CELL_NAIVE_41 423.6
B_CELL_NAIVE_42 423.3
B_CELL_NAIVE_43 423.3
B_CELL_NAIVE_44 421.9
B_CELL_NAIVE_45 421.7
B_CELL_NAIVE_46 420.4
B_CELL_NAIVE_47 420.2
B_CELL_NAIVE_48 416.3
B_CELL_NAIVE_49 414.9
B_CELL_NAIVE_50 411.2
B_CELL_NAIVE_51 410.9
B_CELL_NAIVE_52 405.3
B_CELL_NAIVE_53 404.4
B_CELL_NAIVE_54 403.7
B_CELL_NAIVE_55 400.9
B_CELL_NAIVE_56 400.5
B_CELL_NAIVE_57 398.9
B_CELL_NAIVE_58 397.6
B_CELL_NAIVE_59 391.9
B_CELL_NAIVE_60 391.6
B_CELL_NAIVE_61 387.6
B_CELL_NAIVE_62 382.8
B_CELL_NAIVE_63 382.6
B_CELL_NAIVE_64 382.4
B_CELL_NAIVE_65 381.2
B_CELL_NAIVE_66 380.9
B_CELL_NAIVE_67 379.5
B_CELL_NAIVE_68 377.8
B_CELL_NAIVE_69 377.6
B_CELL_NAIVE_70 375.4
B_CELL_NAIVE_71 368.9
B_CELL_NAIVE_72 368.3
B_CELL_NAIVE_73 365.5
B_CELL_NAIVE_74 364.0
B_CELL_NAIVE_75 363.7
B_CELL_NAIVE_76 359.0
B_CELL_NAIVE_77 352.9
B_CELL_NAIVE_78 351.2
B_CELL_NAIVE_79 349.5
B_CELL_NAIVE_80 338.8
B_CELL_NAIVE_81 332.1
B_CELL_NAIVE_82 327.5
B_CELL_NAIVE_83 322.9
B_CELL_NAIVE_84 321.7
B_CELL_NAIVE_85 318.4
B_CELL_NAIVE_86 317.5
B_CELL_NAIVE_87 317.3
B_CELL_NAIVE_88 315.1
B_CELL_NAIVE_89 308.2
B_CELL_NAIVE_90 266.7
B_CELL_NAIVE_91 217.5
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