A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.9
nTPM
Monaco:
22.9
nTPM
Schmiedel:
11.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.9
HPA sample
nTPM
Classical monocyte nTPM: 4.6
Samples: 6
Max nTPM: 6.8
Min nTPM: 2.4
P10809_1003
4.9
P10809_1020
6.8
P10809_1039
4.7
P10809_1058
2.4
P10809_1080
4.9
P10809_1107
3.7
Intermediate monocyte nTPM: 8.9
Samples: 6
Max nTPM: 13.0
Min nTPM: 2.2
P10809_1004
10.0
P10809_1023
11.3
P10809_1042
2.2
P10809_1061
8.2
P10809_1081
8.8
P10809_1108
13.0
Non-classical monocyte nTPM: 7.1
Samples: 5
Max nTPM: 25.5
Min nTPM: 0.9
P10809_1005
3.2
P10809_1053
2.5
P10809_1072
25.5
P10809_1082
0.9
P10809_1109
3.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.9
Monaco sample
nTPM
Classical monocyte nTPM: 14.8
Samples: 4
Max nTPM: 16.8
Min nTPM: 11.8
RHH5313_R3680
14.8
RHH5221_R3593
16.8
RHH5250_R3622
15.8
RHH5279_R3651
11.8
Intermediate monocyte nTPM: 23.0
Samples: 4
Max nTPM: 33.4
Min nTPM: 17.9
RHH5314_R3681
20.5
RHH5222_R3594
33.4
RHH5251_R3623
17.9
RHH5280_R3652
20.0
Non-classical monocyte nTPM: 15.7
Samples: 4
Max nTPM: 29.0
Min nTPM: 6.5
RHH5315_R3682
9.9
RHH5223_R3595
17.3
RHH5252_R3624
29.0
RHH5281_R3653
6.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.3
Schmiedel sample id
TPM
Classical monocyte TPM: 11.3
Samples: 91
Max TPM: 25.0
Min TPM: 4.7
MONOCYTES_1
25.0
MONOCYTES_2
23.6
MONOCYTES_3
22.3
MONOCYTES_4
21.5
MONOCYTES_5
20.2
MONOCYTES_6
19.3
MONOCYTES_7
19.0
MONOCYTES_8
18.8
MONOCYTES_9
18.6
MONOCYTES_10
17.8
MONOCYTES_11
17.2
MONOCYTES_12
16.7
MONOCYTES_13
16.4
MONOCYTES_14
16.1
MONOCYTES_15
15.9
MONOCYTES_16
15.3
MONOCYTES_17
14.7
MONOCYTES_18
14.3
MONOCYTES_19
13.7
MONOCYTES_20
13.5
MONOCYTES_21
13.4
MONOCYTES_22
13.1
MONOCYTES_23
13.0
MONOCYTES_24
13.0
MONOCYTES_25
13.0
MONOCYTES_26
12.8
MONOCYTES_27
12.8
MONOCYTES_28
12.7
MONOCYTES_29
12.5
MONOCYTES_30
12.0
MONOCYTES_31
11.8
MONOCYTES_32
11.5
MONOCYTES_33
11.5
MONOCYTES_34
11.4
MONOCYTES_35
11.2
MONOCYTES_36
11.0
MONOCYTES_37
10.9
MONOCYTES_38
10.8
MONOCYTES_39
10.7
MONOCYTES_40
10.7
MONOCYTES_41
10.6
MONOCYTES_42
10.5
MONOCYTES_43
10.3
MONOCYTES_44
10.2
MONOCYTES_45
10.1
MONOCYTES_46
10.1
MONOCYTES_47
10.1
MONOCYTES_48
10.0
MONOCYTES_49
10.0
MONOCYTES_50
10.0
MONOCYTES_51
9.8
MONOCYTES_52
9.8
MONOCYTES_53
9.7
MONOCYTES_54
9.6
MONOCYTES_55
9.6
MONOCYTES_56
9.4
MONOCYTES_57
9.3
MONOCYTES_58
9.3
MONOCYTES_59
9.3
MONOCYTES_60
9.3
MONOCYTES_61
9.2
MONOCYTES_62
9.2
MONOCYTES_63
9.2
MONOCYTES_64
8.9
MONOCYTES_65
8.7
MONOCYTES_66
8.6
MONOCYTES_67
8.5
MONOCYTES_68
8.5
MONOCYTES_69
8.5
MONOCYTES_70
8.4
MONOCYTES_71
8.4
MONOCYTES_72
8.3
MONOCYTES_73
8.3
MONOCYTES_74
8.2
MONOCYTES_75
8.0
MONOCYTES_76
8.0
MONOCYTES_77
7.6
MONOCYTES_78
7.6
MONOCYTES_79
7.6
MONOCYTES_80
7.5
MONOCYTES_81
7.4
MONOCYTES_82
7.0
MONOCYTES_83
7.0
MONOCYTES_84
6.9
MONOCYTES_85
6.7
MONOCYTES_86
6.3
MONOCYTES_87
6.2
MONOCYTES_88
5.6
MONOCYTES_89
5.4
MONOCYTES_90
4.9
MONOCYTES_91
4.7
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Non-classical monocyte TPM: 8.1
Samples: 90
Max TPM: 24.5
Min TPM: 2.7
M2_1
24.5
M2_2
21.7
M2_3
20.8
M2_4
17.9
M2_5
16.4
M2_6
16.1
M2_7
15.4
M2_8
14.7
M2_9
13.7
M2_10
12.9
M2_11
12.5
M2_12
12.4
M2_13
11.6
M2_14
11.4
M2_15
11.3
M2_16
11.2
M2_17
11.1
M2_18
10.6
M2_19
10.5
M2_20
10.2
M2_21
10.2
M2_22
10.1
M2_23
10.0
M2_24
9.9
M2_25
9.9
M2_26
9.7
M2_27
9.6
M2_28
9.1
M2_29
9.1
M2_30
9.1
M2_31
9.0
M2_32
8.6
M2_33
8.4
M2_34
8.4
M2_35
8.3
M2_36
8.2
M2_37
7.9
M2_38
7.8
M2_39
7.8
M2_40
7.5
M2_41
7.4
M2_42
7.4
M2_43
7.2
M2_44
7.1
M2_45
6.9
M2_46
6.8
M2_47
6.7
M2_48
6.6
M2_49
6.5
M2_50
6.3
M2_51
6.2
M2_52
6.2
M2_53
6.1
M2_54
5.9
M2_55
5.9
M2_56
5.8
M2_57
5.8
M2_58
5.7
M2_59
5.6
M2_60
5.5
M2_61
5.4
M2_62
5.4
M2_63
5.3
M2_64
5.3
M2_65
5.3
M2_66
5.2
M2_67
5.1
M2_68
5.0
M2_69
4.9
M2_70
4.9
M2_71
4.8
M2_72
4.8
M2_73
4.8
M2_74
4.6
M2_75
4.6
M2_76
4.5
M2_77
4.4
M2_78
4.3
M2_79
4.2
M2_80
4.2
M2_81
4.1
M2_82
4.1
M2_83
3.9
M2_84
3.8
M2_85
3.7
M2_86
3.6
M2_87
3.6
M2_88
3.5
M2_89
3.3
M2_90
2.7
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