A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
172.5
nTPM
Monaco:
288.5
nTPM
Schmiedel:
20.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
172.5
HPA sample
nTPM
Memory B-cell nTPM: 172.5
Samples: 6
Max nTPM: 221.4
Min nTPM: 104.3
P10809_1017
104.3
P10809_1025
221.4
P10809_1044
108.7
P10809_1063
204.9
P10809_1092
211.9
P10809_1105
183.6
Naive B-cell nTPM: 91.5
Samples: 6
Max nTPM: 233.5
Min nTPM: 23.0
P10809_1011
23.0
P10809_1029
84.2
P10809_1048
233.5
P10809_1067
75.6
P10809_1091
78.0
P10809_1104
54.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
288.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 170.1
Samples: 4
Max nTPM: 202.5
Min nTPM: 129.4
RHH5310_R3677
200.2
RHH5218_R3590
129.4
RHH5247_R3619
202.5
RHH5276_R3648
148.3
Naive B-cell nTPM: 65.7
Samples: 4
Max nTPM: 74.6
Min nTPM: 43.6
RHH5308_R3675
74.5
RHH5216_R3588
74.6
RHH5245_R3617
43.6
RHH5274_R3646
70.2
Non-switched memory B-cell nTPM: 243.3
Samples: 4
Max nTPM: 320.8
Min nTPM: 170.6
RHH5309_R3676
216.0
RHH5217_R3589
265.6
RHH5246_R3618
320.8
RHH5275_R3647
170.6
Plasmablast nTPM: 209.7
Samples: 4
Max nTPM: 241.8
Min nTPM: 158.0
RHH5312_R3679
241.8
RHH5220_R3592
234.0
RHH5249_R3621
205.1
RHH5278_R3650
158.0
Switched memory B-cell nTPM: 288.5
Samples: 4
Max nTPM: 333.8
Min nTPM: 246.8
RHH5311_R3678
246.8
RHH5219_R3591
324.3
RHH5248_R3620
333.8
RHH5277_R3649
249.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.0
Schmiedel sample id
TPM
Naive B-cell TPM: 20.0
Samples: 91
Max TPM: 46.1
Min TPM: 4.8
B_CELL_NAIVE_1
46.1
B_CELL_NAIVE_2
37.9
B_CELL_NAIVE_3
35.4
B_CELL_NAIVE_4
33.7
B_CELL_NAIVE_5
32.3
B_CELL_NAIVE_6
31.4
B_CELL_NAIVE_7
31.4
B_CELL_NAIVE_8
30.8
B_CELL_NAIVE_9
30.4
B_CELL_NAIVE_10
29.4
B_CELL_NAIVE_11
28.2
B_CELL_NAIVE_12
28.0
B_CELL_NAIVE_13
27.8
B_CELL_NAIVE_14
27.5
B_CELL_NAIVE_15
27.3
B_CELL_NAIVE_16
26.8
B_CELL_NAIVE_17
26.8
B_CELL_NAIVE_18
26.3
B_CELL_NAIVE_19
26.1
B_CELL_NAIVE_20
25.8
B_CELL_NAIVE_21
25.1
B_CELL_NAIVE_22
25.0
B_CELL_NAIVE_23
25.0
B_CELL_NAIVE_24
24.5
B_CELL_NAIVE_25
24.5
B_CELL_NAIVE_26
24.3
B_CELL_NAIVE_27
24.1
B_CELL_NAIVE_28
24.0
B_CELL_NAIVE_29
23.8
B_CELL_NAIVE_30
23.6
B_CELL_NAIVE_31
23.3
B_CELL_NAIVE_32
23.0
B_CELL_NAIVE_33
22.7
B_CELL_NAIVE_34
22.4
B_CELL_NAIVE_35
22.1
B_CELL_NAIVE_36
21.9
B_CELL_NAIVE_37
21.7
B_CELL_NAIVE_38
20.9
B_CELL_NAIVE_39
20.9
B_CELL_NAIVE_40
20.4
B_CELL_NAIVE_41
20.4
B_CELL_NAIVE_42
20.2
B_CELL_NAIVE_43
20.1
B_CELL_NAIVE_44
19.9
B_CELL_NAIVE_45
19.4
B_CELL_NAIVE_46
19.4
B_CELL_NAIVE_47
19.3
B_CELL_NAIVE_48
19.3
B_CELL_NAIVE_49
18.6
B_CELL_NAIVE_50
18.5
B_CELL_NAIVE_51
18.5
B_CELL_NAIVE_52
18.4
B_CELL_NAIVE_53
18.3
B_CELL_NAIVE_54
18.2
B_CELL_NAIVE_55
18.0
B_CELL_NAIVE_56
17.7
B_CELL_NAIVE_57
17.5
B_CELL_NAIVE_58
17.0
B_CELL_NAIVE_59
17.0
B_CELL_NAIVE_60
16.9
B_CELL_NAIVE_61
16.3
B_CELL_NAIVE_62
16.1
B_CELL_NAIVE_63
15.3
B_CELL_NAIVE_64
15.1
B_CELL_NAIVE_65
15.0
B_CELL_NAIVE_66
14.6
B_CELL_NAIVE_67
14.5
B_CELL_NAIVE_68
14.3
B_CELL_NAIVE_69
14.3
B_CELL_NAIVE_70
14.2
B_CELL_NAIVE_71
14.1
B_CELL_NAIVE_72
13.9
B_CELL_NAIVE_73
13.7
B_CELL_NAIVE_74
13.6
B_CELL_NAIVE_75
13.6
B_CELL_NAIVE_76
13.5
B_CELL_NAIVE_77
13.0
B_CELL_NAIVE_78
12.9
B_CELL_NAIVE_79
12.7
B_CELL_NAIVE_80
12.1
B_CELL_NAIVE_81
11.5
B_CELL_NAIVE_82
11.3
B_CELL_NAIVE_83
11.3
B_CELL_NAIVE_84
10.9
B_CELL_NAIVE_85
9.2
B_CELL_NAIVE_86
9.0
B_CELL_NAIVE_87
8.9
B_CELL_NAIVE_88
7.1
B_CELL_NAIVE_89
7.0
B_CELL_NAIVE_90
5.4
B_CELL_NAIVE_91
4.8
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