A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
32.4
nTPM
Monaco:
52.6
nTPM
Schmiedel:
23.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.4
HPA sample
nTPM
Classical monocyte nTPM: 30.8
Samples: 6
Max nTPM: 49.9
Min nTPM: 11.6
P10809_1003
11.6
P10809_1020
25.1
P10809_1039
42.1
P10809_1058
38.1
P10809_1080
49.9
P10809_1107
18.0
Intermediate monocyte nTPM: 32.0
Samples: 6
Max nTPM: 46.2
Min nTPM: 9.4
P10809_1004
9.4
P10809_1023
29.6
P10809_1042
41.9
P10809_1061
44.4
P10809_1081
46.2
P10809_1108
20.2
Non-classical monocyte nTPM: 32.3
Samples: 5
Max nTPM: 87.5
Min nTPM: 6.6
P10809_1005
6.6
P10809_1053
28.8
P10809_1072
87.5
P10809_1082
21.6
P10809_1109
17.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.6
Monaco sample
nTPM
Classical monocyte nTPM: 52.7
Samples: 4
Max nTPM: 58.9
Min nTPM: 46.7
RHH5313_R3680
58.9
RHH5221_R3593
48.5
RHH5250_R3622
56.5
RHH5279_R3651
46.7
Intermediate monocyte nTPM: 38.9
Samples: 4
Max nTPM: 61.4
Min nTPM: 23.1
RHH5314_R3681
61.4
RHH5222_R3594
23.1
RHH5251_R3623
26.4
RHH5280_R3652
44.8
Non-classical monocyte nTPM: 28.5
Samples: 4
Max nTPM: 39.6
Min nTPM: 18.3
RHH5315_R3682
39.6
RHH5223_R3595
29.1
RHH5252_R3624
26.8
RHH5281_R3653
18.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.8
Schmiedel sample id
TPM
Classical monocyte TPM: 23.8
Samples: 91
Max TPM: 67.3
Min TPM: 4.7
MONOCYTES_1
67.3
MONOCYTES_2
54.6
MONOCYTES_3
45.4
MONOCYTES_4
44.7
MONOCYTES_5
43.7
MONOCYTES_6
43.2
MONOCYTES_7
41.5
MONOCYTES_8
41.1
MONOCYTES_9
40.7
MONOCYTES_10
39.1
MONOCYTES_11
37.7
MONOCYTES_12
37.2
MONOCYTES_13
36.5
MONOCYTES_14
36.3
MONOCYTES_15
34.7
MONOCYTES_16
33.1
MONOCYTES_17
33.0
MONOCYTES_18
32.2
MONOCYTES_19
31.7
MONOCYTES_20
31.6
MONOCYTES_21
30.2
MONOCYTES_22
30.2
MONOCYTES_23
29.9
MONOCYTES_24
29.8
MONOCYTES_25
29.7
MONOCYTES_26
28.4
MONOCYTES_27
27.6
MONOCYTES_28
27.6
MONOCYTES_29
27.5
MONOCYTES_30
27.3
MONOCYTES_31
27.2
MONOCYTES_32
27.1
MONOCYTES_33
26.9
MONOCYTES_34
26.9
MONOCYTES_35
26.8
MONOCYTES_36
26.7
MONOCYTES_37
26.5
MONOCYTES_38
25.7
MONOCYTES_39
25.3
MONOCYTES_40
24.3
MONOCYTES_41
23.4
MONOCYTES_42
23.3
MONOCYTES_43
23.1
MONOCYTES_44
22.3
MONOCYTES_45
21.7
MONOCYTES_46
21.0
MONOCYTES_47
20.8
MONOCYTES_48
20.7
MONOCYTES_49
20.2
MONOCYTES_50
20.1
MONOCYTES_51
19.8
MONOCYTES_52
19.5
MONOCYTES_53
19.4
MONOCYTES_54
19.4
MONOCYTES_55
19.2
MONOCYTES_56
19.1
MONOCYTES_57
19.0
MONOCYTES_58
18.9
MONOCYTES_59
18.8
MONOCYTES_60
18.2
MONOCYTES_61
17.7
MONOCYTES_62
17.3
MONOCYTES_63
16.5
MONOCYTES_64
16.0
MONOCYTES_65
15.9
MONOCYTES_66
15.8
MONOCYTES_67
15.4
MONOCYTES_68
15.2
MONOCYTES_69
14.9
MONOCYTES_70
14.6
MONOCYTES_71
13.7
MONOCYTES_72
13.6
MONOCYTES_73
13.5
MONOCYTES_74
13.5
MONOCYTES_75
13.3
MONOCYTES_76
12.9
MONOCYTES_77
12.8
MONOCYTES_78
12.6
MONOCYTES_79
12.4
MONOCYTES_80
12.2
MONOCYTES_81
11.9
MONOCYTES_82
11.5
MONOCYTES_83
11.3
MONOCYTES_84
11.2
MONOCYTES_85
11.1
MONOCYTES_86
10.9
MONOCYTES_87
10.6
MONOCYTES_88
9.6
MONOCYTES_89
9.3
MONOCYTES_90
7.9
MONOCYTES_91
4.7
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Non-classical monocyte TPM: 22.1
Samples: 90
Max TPM: 110.4
Min TPM: 4.2
M2_1
110.4
M2_2
66.9
M2_3
66.2
M2_4
63.3
M2_5
63.2
M2_6
62.0
M2_7
61.5
M2_8
58.7
M2_9
56.6
M2_10
55.9
M2_11
54.4
M2_12
42.9
M2_13
38.1
M2_14
36.9
M2_15
36.8
M2_16
28.7
M2_17
28.4
M2_18
28.4
M2_19
27.8
M2_20
26.7
M2_21
26.6
M2_22
26.1
M2_23
26.0
M2_24
24.3
M2_25
24.1
M2_26
22.6
M2_27
22.3
M2_28
22.2
M2_29
22.1
M2_30
21.8
M2_31
20.9
M2_32
19.1
M2_33
18.6
M2_34
18.6
M2_35
18.5
M2_36
18.5
M2_37
18.3
M2_38
18.1
M2_39
17.4
M2_40
17.4
M2_41
16.9
M2_42
16.3
M2_43
16.2
M2_44
16.0
M2_45
15.9
M2_46
15.4
M2_47
14.9
M2_48
14.8
M2_49
14.8
M2_50
14.7
M2_51
14.6
M2_52
14.5
M2_53
14.3
M2_54
13.8
M2_55
13.7
M2_56
13.7
M2_57
13.5
M2_58
13.4
M2_59
12.3
M2_60
11.9
M2_61
11.7
M2_62
11.3
M2_63
11.3
M2_64
11.0
M2_65
10.9
M2_66
10.9
M2_67
10.7
M2_68
10.6
M2_69
10.4
M2_70
10.3
M2_71
10.1
M2_72
10.0
M2_73
9.8
M2_74
9.6
M2_75
9.3
M2_76
9.1
M2_77
8.0
M2_78
7.7
M2_79
7.6
M2_80
7.4
M2_81
7.2
M2_82
7.1
M2_83
7.0
M2_84
6.9
M2_85
6.7
M2_86
6.5
M2_87
6.4
M2_88
6.1
M2_89
4.9
M2_90
4.2
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