HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.9 nTPM
HPA Brain:58.4 nTPM
GTEx:12.9 nTPM
FANTOM5:27.1 Scaled Tags Per Million
Pig:27.1 nTPM
Mouse:19.9 nTPM
Allen mouse:2.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 58.4
Sample id Sample description nTPM
Hippocampus
nTPM: 51.3
1911 Female, age 85, right hemisphere 58.6
1898 Male, age 80, left hemisphere 55.8
2529 Female, age 94, left hemisphere 50.4
2621 Female, age 67, right hemisphere 50.1
2148 Female, age 91, left hemisphere 47.0
1855 Male, age 76, left hemisphere 45.9
Dentate gyrus
nTPM: 51.9
1927 Female, age 91, both hemispheres 59.9
2246 Female, age 85, both hemispheres 55.9
2530 Female, age 94, left hemisphere 51.3
2010 Male, age 76, both hemispheres 50.1
2528 Male, age 74, both hemispheres 47.4
2531 Female, age 67, both hemispheres 46.6
Entorhinal gyrus
nTPM: 52.6
1938 Female, age 85, left hemisphere 57.2
1787 Male, age 76, left hemisphere 53.5
2686 Male, age 75, right hemisphere 53.4
2613 Female, age 94, left hemisphere 51.8
2764 Male, age 80, right hemisphere 51.4
2117 Female, age 91, right hemisphere 48.4
Hippocampus, CA1
nTPM: 49.9
1873 Female, age 85, both hemispheres 58.6
2749 Male, age 80, left hemisphere 56.8
2527 Male, age 74, both hemispheres 48.7
2082 Female, age 91, right hemisphere 47.2
2045 Male, age 76, both hemispheres 38.1
Hippocampus, CA2
nTPM: 53.5
1892 Male, age 76, both hemispheres 65.9
1963 Male, age 80, left hemisphere 61.8
2437 Female, age 94, left hemisphere 59.6
2113 Female, age 91, right hemisphere 47.5
2249 Male, age 74, both hemispheres 44.4
1940 Female, age 85, left hemisphere 41.9
Hippocampus, CA3
nTPM: 55.7
2137 Male, age 80, left hemisphere 62.5
1867 Male, age 76, both hemispheres 61.9
2436 Male, age 74, both hemispheres 59.8
1891 Female, age 85, both hemispheres 55.3
2861 Female, age 67, both hemispheres 49.1
2620 Female, age 94, left hemisphere 45.9
Parahippocampal cortex
nTPM: 55.9
1850 Male, age 80, both hemispheres 66.9
1933 Female, age 85, both hemispheres 61.3
2622 Female, age 67, right hemisphere 57.8
2693 Female, age 94, both hemispheres 55.6
1990 Female, age 91, right hemisphere 55.5
2692 Male, age 74, both hemispheres 54.9
2532 Female, age 72, left hemisphere 54.5
2245 Female, age 91, both hemispheres 52.5
2250 Female, age 67, right hemisphere 50.9
2018 Male, age 76, both hemispheres 48.9
Perirhinal gyrus
nTPM: 58.4
1847 Female, age 91, left hemisphere 63.9
1841 Female, age 85, right hemisphere 61.1
1794 Male, age 80, right hemisphere 59.7
2848 Male, age 76, right hemisphere 58.2
2521 Female, age 94, right hemisphere 49.1
Subiculum
nTPM: 56.4
2438 Female, age 94, left hemisphere 75.8
1901 Male, age 80, both hemispheres 57.0
2619 Male, age 74, both hemispheres 53.7
2042 Male, age 76, both hemispheres 51.2
1977 Female, age 85, both hemispheres 51.0
2729 Female, age 91, right hemisphere 49.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 12.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.9
Samples: 255

Max nTPM: 23.5
Min nTPM: 4.1
Std nTPM: 3.0
Median nTPM: 12.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 23.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 22.3
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 21.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 20.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 20.4
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 20.3
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 19.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 19.3
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 19.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 19.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 19.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 27.1
FF:10169-103B7 60 years, female 32.1
FF:10153-102I9 76 years, female 22.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 27.1
Pig sample Sample description nTPM
Subiculum
nTPM: 23.1
Samples: 4

Max nTPM: 24.6
Min nTPM: 21.2
Sample A Female 24.6
Sample B Female 24.5
Sample C Male 22.0
Sample D Male 21.2
Dorsal hippocampus
nTPM: 21.5
Samples: 4

Max nTPM: 22.9
Min nTPM: 19.3
Sample A Female 21.3
Sample B Female 22.4
Sample C Male 22.9
Sample D Male 19.3
Entorhinal cortex
nTPM: 27.1
Samples: 4

Max nTPM: 33.9
Min nTPM: 23.1
Sample A Female 25.0
Sample B Female 33.9
Sample C Male 26.5
Sample D Male 23.1
Ventral hippocampus
nTPM: 22.0
Samples: 4

Max nTPM: 24.3
Min nTPM: 18.1
Sample A Female 23.0
Sample B Female 24.3
Sample C Male 22.6
Sample D Male 18.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 19.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 19.9
Samples: 4

Max nTPM: 21.6
Min nTPM: 18.2
Sample A Male 20.8
Sample B Male 18.2
Sample C Female 18.8
Sample D Female 21.6
Hippocampal formation
nTPM: 17.9
Samples: 4

Max nTPM: 22.2
Min nTPM: 15.9
Sample A Male 22.2
Sample B Male 15.9
Sample C Female 16.4
Sample D Female 17.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.7
68843763 Antisense, RP_050217_02_B12, Mouse strain C57BL/6J (56 days, male) 2.7

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