BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:150.2 nTPM
HPA Brain:428.3 nTPM
GTEx:150.2 nTPM
FANTOM5:66.9 Scaled Tags Per Million
Macaque:249.6 nTPM
Mouse:876.0 nTPM
Rat:603.4 nTPM
Pig:693.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 428.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 338.3
1827 Male, age 72, unknown 438.1
2219 Male, age 76, both hemispheres 437.7
2019 Male, age 18, unknown 423.7
2828 Female, age 72, unknown 379.7
2666 Male, age 74, left hemisphere 371.5
2411 Female, age 72, unknown 349.2
2586 Male, age 75, left hemisphere 342.4
1870 Female, age 42, unknown 221.9
1833 Male, age 53, unknown 211.8
1830 Male, age 51, unknown 207.1
Dorsal raphe nucleus
nTPM: 322.5
2298 Female, age 72, unknown 399.2
1828 Male, age 53, unknown 385.4
2047 Male, age 72, unknown 354.7
2750 Male, age 76, both hemispheres 280.7
2016 Female, age 72, unknown 192.3
Inferior colliculus
nTPM: 279.3
2097 Female, age 72, unknown 379.4
1890 Male, age 53, unknown 304.6
1848 Female, age 42, unknown 260.1
2849 Male, age 72, unknown 173.1
Median raphe nucleus
nTPM: 289.1
2220 Male, age 76, midline 289.1
Periaquaductal grey, anterior
nTPM: 338.9
1795 Male, age 51, unknown 428.4
1947 Male, age 18, unknown 348.5
2502 Female, age 75, unknown 239.7
Periaquaductal grey, dorsal
nTPM: 214.9
1831 Male, age 72, unknown 282.2
2464 Female, age 72, unknown 216.9
1840 Male, age 53, unknown 181.9
2850 Male, age 76, both hemispheres 178.5
Periaquaductal grey, lateral
nTPM: 205.5
2053 Male, age 18, unknown 229.2
2272 Male, age 74, both hemispheres 224.1
2140 Male, age 76, both hemispheres 163.3
Pretectal area
nTPM: 416.2
1944 Female, age 72, unknown 680.8
1816 Male, age 51, unknown 666.9
2007 Male, age 72, unknown 599.8
1817 Female, age 42, unknown 578.7
2667 Female, age 75, unknown 492.5
1815 Male, age 53, unknown 422.1
2224 Female, age 72, unknown 277.5
2273 Male, age 74, both hemispheres 246.4
2825 Male, age 18, unknown 220.7
2407 Male, age 75, both hemispheres 199.2
2316 Male, age 76, right hemisphere 193.1
Red nucleus
nTPM: 306.5
1821 Female, age 72, unknown 409.6
2785 Male, age 18, unknown 374.5
2503 Female, age 72, unknown 327.9
2823 Male, age 76, right hemisphere 327.6
2725 Female, age 75, unknown 308.4
1954 Female, age 42, unknown 300.1
1865 Male, age 51, unknown 282.0
2769 Male, age 72, unknown 281.2
2588 Male, age 74, left hemisphere 276.0
1904 Male, age 53, unknown 272.8
2227 Male, age 72, unknown 267.2
2584 Male, age 75, left hemisphere 250.7
Substantia nigra
nTPM: 428.3
1916 Female, age 42, unknown 688.7
1941 Male, age 53, unknown 679.1
1889 Female, age 72, unknown 553.9
1851 Male, age 51, unknown 469.9
2409 Female, age 72, unknown 393.7
2665 Male, age 74, both hemispheres 382.4
2241 Male, age 72, unknown 308.3
2583 Male, age 75, right hemisphere 272.3
2699 Male, age 18, unknown 272.1
2590 Female, age 75, unknown 263.0
Superior colliculus
nTPM: 324.0
2087 Female, age 72, unknown 596.6
2668 Female, age 75, unknown 473.5
2261 Male, age 18, unknown 394.2
1796 Male, age 53, unknown 370.1
1913 Female, age 42, unknown 269.2
1895 Male, age 76, right hemisphere 266.4
2664 Male, age 75, both hemispheres 238.1
1995 Male, age 72, unknown 227.8
1839 Male, age 51, unknown 218.2
2587 Male, age 74, left hemisphere 186.1
Ventral tegmental area
nTPM: 364.6
2410 Female, age 72, unknown 601.9
2218 Male, age 76, both hemispheres 463.8
1915 Female, age 42, unknown 413.0
1942 Male, age 51, unknown 290.5
2223 Female, age 72, unknown 214.7
2021 Male, age 53, unknown 203.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 150.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 150.2
Samples: 183

Max nTPM: 1073.2
Min nTPM: 9.9
Std nTPM: 135.2
Median nTPM: 111.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1073.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 796.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 522.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 514.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 507.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 458.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 429.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 405.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 384.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 377.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 365.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 66.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.9
FF:10158-103A5 76 years, female 66.9

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 249.6
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 168.8
Samples: 1

Max nTPM: 168.8
Min nTPM: 168.8
Sample A 168.8
Midbrain
nTPM: 145.7
Samples: 1

Max nTPM: 145.7
Min nTPM: 145.7
Sample A 145.7
Superior colliculi
nTPM: 249.6
Samples: 1

Max nTPM: 249.6
Min nTPM: 249.6
Sample A 249.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 693.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 424.7
Samples: 3

Max nTPM: 488.6
Min nTPM: 301.4
Sample A Female 488.6
Sample B Female 301.4
Sample C Male 484.0
Midbrain
nTPM: 693.1
Samples: 3

Max nTPM: 1266.4
Min nTPM: 246.1
Sample B Female 246.1
Sample C Male 1266.4
Sample D Male 566.8
Periaqueductal gray
nTPM: 222.7
Samples: 3

Max nTPM: 254.5
Min nTPM: 185.8
Sample B Female 227.7
Sample C Male 254.5
Sample D Male 185.8
Superior colliculi
nTPM: 614.3
Samples: 4

Max nTPM: 1080.3
Min nTPM: 349.1
Sample A Female 508.8
Sample B Female 349.1
Sample C Male 1080.3
Sample D Male 518.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 876.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 876.0
Samples: 4

Max nTPM: 951.7
Min nTPM: 809.3
Sample A 809.3
Sample B 951.7
Sample C 910.6
Sample D 832.4

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 603.4
Rat sample Sample description nTPM
Midbrain
nTPM: 603.5
Samples: 4

Max nTPM: 631.6
Min nTPM: 586.7
Sample A 631.6
Sample A 593.0
Sample A 602.5
Sample A 586.7

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo