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  • NDRG4
EVOLUTIONARY PONS Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
PONS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:975.0 nTPM
FANTOM5:1242.1 Scaled Tags Per Million
Macaque:341.0 nTPM
Mouse:975.6 nTPM
Rat:694.5 nTPM
Pig:651.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

PONS - HPA Brain Stereo-seq

PONS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

975.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 432.3
1984 Male, age 76, both hemispheres 684.5
2301 Female, age 85, both hemispheres 393.2
2188 Female, age 91, both hemispheres 345.5
2090 Male, age 80, both hemispheres 305.9
Dorsal cochlear nucleus
nTPM: 343.1
2058 Male, age 76, both hemispheres 424.3
2370 Male, age 61, both hemispheres 350.4
2802 Male, age 74, right hemisphere 341.3
2187 Female, age 91, both hemispheres 301.1
2378 Male, age 80, both hemispheres 298.3
Dorsal tegmental nucleus
nTPM: 292.1
1936 Male, age 76, left hemisphere 356.9
2083 Male, age 80, both hemispheres 333.2
2358 Male, age 61, both hemispheres 264.3
2326 Male, age 74, both hemispheres 214.2
Dorsolateral tegmental area
nTPM: 274.6
2751 Female, age 85, both hemispheres 375.9
2141 Male, age 76, both hemispheres 357.6
2654 Male, age 80, both hemispheres 293.5
2360 Male, age 74, both hemispheres 241.4
2337 Male, age 61, both hemispheres 104.5
Kolliker-Fuse nucleus
nTPM: 375.8
2793 Female, age 91, left hemisphere 424.3
2163 Male, age 80, both hemispheres 408.1
2315 Male, age 76, right hemisphere 294.9
Lateral lemniscal nuclei
nTPM: 799.4
2036 Male, age 80, both hemispheres 1073.4
2169 Male, age 76, both hemispheres 882.5
2746 Female, age 85, left hemisphere 765.3
2453 Male, age 74, right hemisphere 761.6
2320 Female, age 91, left hemisphere 514.4
Lateral parabrachial nucleus
nTPM: 494.6
2139 Female, age 85, right hemisphere 897.7
2013 Male, age 80, both hemispheres 507.5
2790 Male, age 61, both hemispheres 397.1
2792 Male, age 76, both hemispheres 175.9
Lateral vestibular nucleus
nTPM: 378.7
2184 Male, age 76, both hemispheres 518.4
2311 Male, age 80, both hemispheres 239.1
Locus coeruleus
nTPM: 500.8
2123 Female, age 91, both hemispheres 816.2
2014 Male, age 55, unknown 561.5
2720 Male, age 74, both hemispheres 466.9
1980 Male, age 76, both hemispheres 462.4
2317 Female, age 72, unknown 434.8
2162 Male, age 80, both hemispheres 407.4
2788 Male, age 74, unknown 356.4
Medial parabrachial nucleus
nTPM: 404.7
2854 Male, age 80, both hemispheres 549.7
2463 Female, age 85, right hemisphere 453.0
2156 Male, age 61, both hemispheres 373.1
2786 Male, age 76, both hemispheres 357.7
2170 Female, age 91, both hemispheres 289.8
Medial periolivary nuclei
nTPM: 722.6
2171 Female, age 85, both hemispheres 1172.5
2063 Male, age 76, both hemispheres 958.1
2791 Male, age 74, right hemisphere 585.7
2081 Male, age 80, both hemispheres 476.3
2458 Female, age 91, both hemispheres 420.2
Motor facial nucleus
nTPM: 708.4
2062 Male, age 76, both hemispheres 1051.9
2327 Male, age 80, both hemispheres 829.2
2365 Male, age 74, right hemisphere 706.6
2697 Female, age 85, both hemispheres 624.0
2795 Female, age 91, both hemispheres 525.4
2126 Male, age 61, both hemispheres 513.4
Motor trigeminal nucleus
nTPM: 472.1
2079 Male, age 80, both hemispheres 860.1
2560 Male, age 74, both hemispheres 533.6
2321 Female, age 91, both hemispheres 352.6
2335 Male, age 61, both hemispheres 330.0
2309 Male, age 76, both hemispheres 284.3
Nuclei of the trapezoid body
nTPM: 975.0
2159 Male, age 61, both hemispheres 1449.3
2735 Female, age 85, both hemispheres 1258.7
1983 Male, age 76, both hemispheres 897.6
2166 Male, age 80, both hemispheres 732.2
2368 Female, age 91, both hemispheres 537.2
Nucleus raphe magnus
nTPM: 973.8
2160 Male, age 61, both hemispheres 1612.8
2172 Female, age 85, both hemispheres 1252.5
2455 Male, age 74, both hemispheres 981.2
2328 Male, age 80, both hemispheres 784.3
2051 Male, age 76, both hemispheres 677.3
2459 Female, age 91, both hemispheres 534.9
Paramedian reticular nucleus
nTPM: 499.8
2050 Female, age 85, both hemispheres 889.6
2313 Male, age 61, both hemispheres 466.1
2057 Male, age 80, both hemispheres 422.9
2052 Male, age 76, both hemispheres 220.5
Pedunculopontine tegmental nucleus
nTPM: 321.6
1921 Female, age 85, both hemispheres 397.4
2334 Male, age 80, both hemispheres 294.1
2338 Male, age 61, both hemispheres 273.4
Pontine nuclei
nTPM: 891.3
2787 Female, age 85, both hemispheres 1403.7
2727 Male, age 61, right hemisphere 1354.6
1863 Male, age 55, unknown 1150.3
2109 Female, age 72, unknown 872.2
1968 Male, age 76, left hemisphere 848.4
2115 Male, age 80, left hemisphere 589.9
2454 Male, age 74, left hemisphere 522.2
2319 Female, age 91, both hemispheres 389.3
Pontine raphe nucleus
nTPM: 585.9
2122 Female, age 85, midline 836.4
2853 Male, age 76, midline 335.4
Posteroventral cochlear nucleus
nTPM: 322.0
2752 Female, age 85, both hemispheres 524.9
2070 Male, age 76, both hemispheres 363.9
2371 Male, age 61, both hemispheres 361.0
2341 Male, age 80, both hemispheres 286.6
2135 Female, age 91, both hemispheres 73.6
Principal sensory trigeminal nucleus
nTPM: 835.3
2158 Male, age 61, both hemispheres 1479.4
2008 Male, age 80, left hemisphere 1042.1
2324 Male, age 76, both hemispheres 419.6
2367 Female, age 91, left hemisphere 400.2
Reticular pontine nucleus, caudal
nTPM: 556.4
2332 Male, age 80, right hemisphere 934.1
2092 Male, age 76, both hemispheres 657.1
2457 Female, age 91, both hemispheres 408.5
2559 Male, age 74, both hemispheres 226.1
Reticular pontine nucleus, oral
nTPM: 521.4
2012 Female, age 85, both hemispheres 781.8
2361 Male, age 74, both hemispheres 701.2
1939 Male, age 80, both hemispheres 394.3
2167 Male, age 76, both hemispheres 368.3
2366 Female, age 91, both hemispheres 361.6
Reticulotegmental nucleus
nTPM: 452.0
2325 Male, age 76, both hemispheres 585.2
2333 Male, age 80, both hemispheres 480.1
2452 Male, age 74, both hemispheres 412.1
2322 Female, age 91, both hemispheres 330.4
Spinal trigeminal nucleus, oral
nTPM: 420.0
2737 Female, age 85, both hemispheres 529.2
2164 Male, age 80, both hemispheres 453.1
1978 Male, age 76, both hemispheres 277.6
Subcoeruleus area
nTPM: 436.8
2089 Male, age 76, left hemisphere 694.7
1958 Male, age 80, both hemispheres 572.2
2323 Female, age 91, left hemisphere 387.9
2369 Female, age 85, left hemisphere 270.7
2451 Male, age 74, both hemispheres 258.5
Superior olive
nTPM: 715.4
1875 Female, age 85, both hemispheres 1044.7
2329 Male, age 80, right hemisphere 700.0
2364 Male, age 74, right hemisphere 657.8
2020 Male, age 76, both hemispheres 617.8
2561 Female, age 91, both hemispheres 556.6
Ventral periolivary nuclei
nTPM: 830.6
2130 Female, age 85, both hemispheres 1099.7
2165 Male, age 80, both hemispheres 1007.8
2794 Female, age 91, left hemisphere 678.5
2023 Male, age 76, both hemispheres 536.5
Ventrolateral tegmental area, A5 NE cell group
nTPM: 563.7
2449 Male, age 74, both hemispheres 806.3
1959 Male, age 76, both hemispheres 682.2
2161 Male, age 80, both hemispheres 663.1
2840 Female, age 85, both hemispheres 546.6
2456 Female, age 91, both hemispheres 379.9
2359 Male, age 61, both hemispheres 304.1

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1242.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 446.3
FF:10182-103D2 60 years, female 624.7
FF:10165-103B3 76 years, female 267.9
Pons
Scaled Tags Per Million: 1242.1
FF:10033-101E6 18-54 years, mixed 1242.1

PONS - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

341.0
Macaque sample Sample description nTPM
Pons
nTPM: 341.0
Samples: 2

Max nTPM: 423.0
Min nTPM: 259.0
Sample A 423.0
Sample B 259.0

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

651.0
Pig sample Sample description nTPM
Pons
nTPM: 651.0
Samples: 3

Max nTPM: 1241.0
Min nTPM: 350.6
Sample A Female 1241.0
Sample B Female 361.3
Sample C Male 350.6

PONS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

975.6
Mouse sample Sample description nTPM
Pons
nTPM: 975.7
Samples: 4

Max nTPM: 1148.1
Min nTPM: 834.2
Sample A 1148.1
Sample B 834.2
Sample C 1039.0
Sample D 881.3

PONS - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

694.5
Rat sample Sample description nTPM
Pons
nTPM: 694.4
Samples: 4

Max nTPM: 732.1
Min nTPM: 647.8
Sample A 732.1
Sample A 702.3
Sample A 647.8
Sample A 695.6

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