MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.7 nTPM
HPA Brain:26.0 nTPM
GTEx:77.7 nTPM
FANTOM5:65.4 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 26.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.5
2019 Male, age 18, unknown 30.8
2411 Female, age 72, unknown 27.2
2666 Male, age 74, left hemisphere 26.7
2828 Female, age 72, unknown 26.0
1870 Female, age 42, unknown 24.2
1827 Male, age 72, unknown 24.0
1830 Male, age 51, unknown 23.7
1833 Male, age 53, unknown 21.8
2219 Male, age 76, both hemispheres 20.6
2586 Male, age 75, left hemisphere 19.8
Dorsal raphe nucleus
nTPM: 25.8
2047 Male, age 72, unknown 28.9
2750 Male, age 76, both hemispheres 27.6
1828 Male, age 53, unknown 26.0
2298 Female, age 72, unknown 23.9
2016 Female, age 72, unknown 22.5
Inferior colliculus
nTPM: 22.6
2097 Female, age 72, unknown 25.8
1890 Male, age 53, unknown 23.8
1848 Female, age 42, unknown 22.2
2849 Male, age 72, unknown 18.7
Median raphe nucleus
nTPM: 24.8
2220 Male, age 76, midline 24.8
Periaquaductal grey, anterior
nTPM: 24.3
1947 Male, age 18, unknown 29.0
1795 Male, age 51, unknown 23.1
2502 Female, age 75, unknown 21.0
Periaquaductal grey, dorsal
nTPM: 19.7
1831 Male, age 72, unknown 20.1
2464 Female, age 72, unknown 20.1
1840 Male, age 53, unknown 19.7
2850 Male, age 76, both hemispheres 19.0
Periaquaductal grey, lateral
nTPM: 21.0
2272 Male, age 74, both hemispheres 21.9
2053 Male, age 18, unknown 20.9
2140 Male, age 76, both hemispheres 20.2
Pretectal area
nTPM: 26.0
1816 Male, age 51, unknown 33.1
2007 Male, age 72, unknown 32.8
2224 Female, age 72, unknown 31.0
1817 Female, age 42, unknown 29.5
1815 Male, age 53, unknown 27.9
1944 Female, age 72, unknown 26.9
2667 Female, age 75, unknown 26.4
2273 Male, age 74, both hemispheres 21.6
2316 Male, age 76, right hemisphere 20.2
2825 Male, age 18, unknown 20.0
2407 Male, age 75, both hemispheres 17.1
Red nucleus
nTPM: 25.0
1821 Female, age 72, unknown 28.3
2725 Female, age 75, unknown 28.3
2503 Female, age 72, unknown 28.1
2823 Male, age 76, right hemisphere 28.1
2785 Male, age 18, unknown 27.3
1954 Female, age 42, unknown 26.8
2227 Male, age 72, unknown 24.2
1904 Male, age 53, unknown 23.9
1865 Male, age 51, unknown 22.5
2584 Male, age 75, left hemisphere 21.1
2588 Male, age 74, left hemisphere 20.8
2769 Male, age 72, unknown 20.8
Substantia nigra
nTPM: 24.3
2409 Female, age 72, unknown 30.4
1889 Female, age 72, unknown 27.0
1916 Female, age 42, unknown 25.6
1941 Male, age 53, unknown 25.5
2665 Male, age 74, both hemispheres 24.5
2241 Male, age 72, unknown 24.3
1851 Male, age 51, unknown 23.9
2590 Female, age 75, unknown 22.8
2583 Male, age 75, right hemisphere 21.4
2699 Male, age 18, unknown 18.1
Superior colliculus
nTPM: 23.5
1895 Male, age 76, right hemisphere 27.6
2087 Female, age 72, unknown 27.3
1796 Male, age 53, unknown 24.5
2668 Female, age 75, unknown 24.1
2261 Male, age 18, unknown 23.6
1995 Male, age 72, unknown 23.5
2664 Male, age 75, both hemispheres 22.6
2587 Male, age 74, left hemisphere 21.7
1839 Male, age 51, unknown 20.1
1913 Female, age 42, unknown 19.9
Ventral tegmental area
nTPM: 23.2
1915 Female, age 42, unknown 27.3
2410 Female, age 72, unknown 25.0
1942 Male, age 51, unknown 24.7
2223 Female, age 72, unknown 21.4
2021 Male, age 53, unknown 20.6
2218 Male, age 76, both hemispheres 20.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 77.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.7
Samples: 183

Max nTPM: 156.9
Min nTPM: 46.1
Std nTPM: 17.6
Median nTPM: 75.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 156.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 128.9
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 125.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 124.3
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 124.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 119.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 112.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 111.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 108.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 108.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 107.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 65.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.4
FF:10158-103A5 76 years, female 65.4

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