MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.2 nTPM
HPA Brain:45.1 nTPM
GTEx:35.2 nTPM
FANTOM5:68.9 Scaled Tags Per Million
Pig:47.2 nTPM
Mouse:150.6 nTPM
Allen mouse:2.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.3
2586 Male, age 75, left hemisphere 51.0
1870 Female, age 42, unknown 41.9
2666 Male, age 74, left hemisphere 41.7
1827 Male, age 72, unknown 41.3
2828 Female, age 72, unknown 38.1
1830 Male, age 51, unknown 38.0
1833 Male, age 53, unknown 38.0
2411 Female, age 72, unknown 36.4
2019 Male, age 18, unknown 35.5
2219 Male, age 76, both hemispheres 31.5
Dorsal raphe nucleus
nTPM: 38.0
2298 Female, age 72, unknown 40.8
2047 Male, age 72, unknown 39.9
2750 Male, age 76, both hemispheres 37.4
2016 Female, age 72, unknown 36.5
1828 Male, age 53, unknown 35.4
Inferior colliculus
nTPM: 39.0
2849 Male, age 72, unknown 43.7
1848 Female, age 42, unknown 38.8
2097 Female, age 72, unknown 38.4
1890 Male, age 53, unknown 35.3
Median raphe nucleus
nTPM: 38.3
2220 Male, age 76, midline 38.3
Periaquaductal grey, anterior
nTPM: 45.1
2502 Female, age 75, unknown 50.6
1947 Male, age 18, unknown 43.2
1795 Male, age 51, unknown 41.7
Periaquaductal grey, dorsal
nTPM: 39.7
1840 Male, age 53, unknown 47.1
2850 Male, age 76, both hemispheres 41.2
1831 Male, age 72, unknown 37.1
2464 Female, age 72, unknown 33.4
Periaquaductal grey, lateral
nTPM: 40.4
2053 Male, age 18, unknown 42.1
2140 Male, age 76, both hemispheres 39.6
2272 Male, age 74, both hemispheres 39.6
Pretectal area
nTPM: 41.1
2407 Male, age 75, both hemispheres 46.5
1816 Male, age 51, unknown 44.5
2825 Male, age 18, unknown 43.1
1944 Female, age 72, unknown 42.9
1817 Female, age 42, unknown 41.0
1815 Male, age 53, unknown 40.6
2667 Female, age 75, unknown 40.4
2224 Female, age 72, unknown 39.5
2007 Male, age 72, unknown 39.3
2273 Male, age 74, both hemispheres 38.6
2316 Male, age 76, right hemisphere 36.1
Red nucleus
nTPM: 35.0
2584 Male, age 75, left hemisphere 42.8
1865 Male, age 51, unknown 36.7
2588 Male, age 74, left hemisphere 36.1
1904 Male, age 53, unknown 36.0
2785 Male, age 18, unknown 35.7
2769 Male, age 72, unknown 35.2
1954 Female, age 42, unknown 34.9
1821 Female, age 72, unknown 34.7
2725 Female, age 75, unknown 32.9
2503 Female, age 72, unknown 32.7
2227 Male, age 72, unknown 32.0
2823 Male, age 76, right hemisphere 30.2
Substantia nigra
nTPM: 39.3
2409 Female, age 72, unknown 46.8
1889 Female, age 72, unknown 41.5
2583 Male, age 75, right hemisphere 39.3
1941 Male, age 53, unknown 39.2
1851 Male, age 51, unknown 38.4
2241 Male, age 72, unknown 38.2
2590 Female, age 75, unknown 38.2
1916 Female, age 42, unknown 37.3
2699 Male, age 18, unknown 37.0
2665 Male, age 74, both hemispheres 36.8
Superior colliculus
nTPM: 41.2
2664 Male, age 75, both hemispheres 53.2
2261 Male, age 18, unknown 44.3
1839 Male, age 51, unknown 42.5
2087 Female, age 72, unknown 40.4
1995 Male, age 72, unknown 40.3
2668 Female, age 75, unknown 40.3
1913 Female, age 42, unknown 39.8
1796 Male, age 53, unknown 38.3
2587 Male, age 74, left hemisphere 37.5
1895 Male, age 76, right hemisphere 35.8
Ventral tegmental area
nTPM: 37.4
2021 Male, age 53, unknown 39.7
2223 Female, age 72, unknown 37.6
2218 Male, age 76, both hemispheres 37.3
2410 Female, age 72, unknown 37.2
1915 Female, age 42, unknown 36.9
1942 Male, age 51, unknown 35.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 35.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.2
Samples: 183

Max nTPM: 53.1
Min nTPM: 24.6
Std nTPM: 5.0
Median nTPM: 34.9
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 53.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 51.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 48.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 48.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 47.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 47.5
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 46.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 46.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 46.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 44.3
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 44.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 68.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.9
FF:10158-103A5 76 years, female 68.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 47.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.7
Samples: 4

Max nTPM: 54.6
Min nTPM: 35.8
Sample A Female 54.6
Sample B Female 43.5
Sample C Male 45.0
Sample D Male 35.8
Midbrain
nTPM: 46.8
Samples: 4

Max nTPM: 53.1
Min nTPM: 37.5
Sample A Female 53.1
Sample B Female 37.5
Sample C Male 47.5
Sample D Male 49.1
Periaqueductal gray
nTPM: 40.3
Samples: 3

Max nTPM: 46.9
Min nTPM: 36.6
Sample B Female 36.6
Sample C Male 46.9
Sample D Male 37.5
Superior colliculi
nTPM: 47.2
Samples: 4

Max nTPM: 56.4
Min nTPM: 43.8
Sample A Female 56.4
Sample B Female 44.6
Sample C Male 43.8
Sample D Male 44.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 150.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 150.6
Samples: 4

Max nTPM: 156.7
Min nTPM: 145.0
Sample A Male 148.7
Sample B Male 145.0
Sample C Female 152.1
Sample D Female 156.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
45666 Antisense, RP_040324_01_H03, Mouse strain C57BL/6J (56 days, male) 2.2
67936385 Antisense, RP_040324_01_H03, Mouse strain C57BL/6J (56 days, male) 0.0

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