A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
40.4
nTPM
Monaco:
47.1
nTPM
Schmiedel:
27.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.4
HPA sample
nTPM
NK-cell nTPM: 40.4
Samples: 6
Max nTPM: 78.5
Min nTPM: 23.2
P10809_1013
27.1
P10809_1033
23.2
P10809_1052
28.0
P10809_1071
47.9
P10809_1093
78.5
P10809_1103
37.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.1
Monaco sample
nTPM
NK-cell nTPM: 47.1
Samples: 4
Max nTPM: 59.1
Min nTPM: 34.9
RHH5316_R3683
47.0
RHH5224_R3596
59.1
RHH5253_R3625
34.9
RHH5282_R3654
47.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.3
Schmiedel sample id
TPM
NK-cell TPM: 27.3
Samples: 90
Max TPM: 52.7
Min TPM: 7.9
NK_1
52.7
NK_2
50.1
NK_3
47.3
NK_4
45.4
NK_5
42.1
NK_6
40.7
NK_7
40.4
NK_8
40.3
NK_9
39.1
NK_10
38.4
NK_11
38.0
NK_12
36.2
NK_13
35.7
NK_14
35.6
NK_15
35.4
NK_16
35.3
NK_17
35.1
NK_18
35.1
NK_19
34.7
NK_20
33.5
NK_21
33.4
NK_22
32.4
NK_23
32.4
NK_24
32.3
NK_25
32.2
NK_26
32.0
NK_27
31.6
NK_28
31.6
NK_29
30.7
NK_30
30.7
NK_31
30.5
NK_32
30.2
NK_33
29.8
NK_34
29.6
NK_35
29.6
NK_36
29.2
NK_37
29.1
NK_38
28.1
NK_39
27.1
NK_40
26.7
NK_41
26.6
NK_42
26.5
NK_43
26.4
NK_44
26.0
NK_45
25.9
NK_46
25.4
NK_47
25.4
NK_48
25.4
NK_49
25.3
NK_50
25.2
NK_51
25.2
NK_52
25.1
NK_53
24.9
NK_54
24.9
NK_55
24.8
NK_56
24.4
NK_57
24.3
NK_58
24.3
NK_59
24.3
NK_60
23.5
NK_61
23.4
NK_62
23.2
NK_63
23.1
NK_64
22.8
NK_65
22.1
NK_66
22.0
NK_67
21.7
NK_68
21.7
NK_69
21.6
NK_70
21.5
NK_71
21.2
NK_72
21.2
NK_73
20.1
NK_74
19.9
NK_75
19.4
NK_76
19.2
NK_77
18.9
NK_78
18.2
NK_79
18.1
NK_80
17.0
NK_81
16.9
NK_82
16.0
NK_83
15.2
NK_84
14.3
NK_85
14.2
NK_86
14.0
NK_87
13.2
NK_88
12.4
NK_89
11.3
NK_90
7.9
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