A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
24.1
nTPM
Monaco:
31.2
nTPM
Schmiedel:
14.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.1
HPA sample
nTPM
Classical monocyte nTPM: 14.8
Samples: 6
Max nTPM: 16.7
Min nTPM: 11.6
P10809_1003
11.6
P10809_1020
14.6
P10809_1039
14.3
P10809_1058
16.3
P10809_1080
15.0
P10809_1107
16.7
Intermediate monocyte nTPM: 24.1
Samples: 6
Max nTPM: 35.3
Min nTPM: 18.7
P10809_1004
18.7
P10809_1023
27.6
P10809_1042
21.6
P10809_1061
35.3
P10809_1081
22.5
P10809_1108
18.7
Non-classical monocyte nTPM: 16.5
Samples: 5
Max nTPM: 32.4
Min nTPM: 9.6
P10809_1005
9.6
P10809_1053
13.2
P10809_1072
32.4
P10809_1082
12.5
P10809_1109
14.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.2
Monaco sample
nTPM
Classical monocyte nTPM: 25.7
Samples: 4
Max nTPM: 33.2
Min nTPM: 21.4
RHH5313_R3680
33.2
RHH5221_R3593
25.2
RHH5250_R3622
21.4
RHH5279_R3651
22.9
Intermediate monocyte nTPM: 31.2
Samples: 4
Max nTPM: 36.1
Min nTPM: 26.0
RHH5314_R3681
30.5
RHH5222_R3594
32.3
RHH5251_R3623
36.1
RHH5280_R3652
26.0
Non-classical monocyte nTPM: 17.1
Samples: 4
Max nTPM: 23.9
Min nTPM: 11.2
RHH5315_R3682
19.9
RHH5223_R3595
11.2
RHH5252_R3624
23.9
RHH5281_R3653
13.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.0
Schmiedel sample id
TPM
Classical monocyte TPM: 14.0
Samples: 91
Max TPM: 24.0
Min TPM: 6.5
MONOCYTES_1
24.0
MONOCYTES_2
23.5
MONOCYTES_3
22.0
MONOCYTES_4
21.6
MONOCYTES_5
21.5
MONOCYTES_6
20.9
MONOCYTES_7
20.8
MONOCYTES_8
20.6
MONOCYTES_9
20.5
MONOCYTES_10
19.3
MONOCYTES_11
19.0
MONOCYTES_12
19.0
MONOCYTES_13
18.9
MONOCYTES_14
18.5
MONOCYTES_15
18.5
MONOCYTES_16
18.4
MONOCYTES_17
18.4
MONOCYTES_18
18.3
MONOCYTES_19
17.9
MONOCYTES_20
17.8
MONOCYTES_21
17.7
MONOCYTES_22
17.3
MONOCYTES_23
17.2
MONOCYTES_24
16.8
MONOCYTES_25
16.6
MONOCYTES_26
16.4
MONOCYTES_27
16.3
MONOCYTES_28
16.2
MONOCYTES_29
15.9
MONOCYTES_30
15.8
MONOCYTES_31
15.4
MONOCYTES_32
15.4
MONOCYTES_33
15.2
MONOCYTES_34
15.1
MONOCYTES_35
15.1
MONOCYTES_36
15.0
MONOCYTES_37
15.0
MONOCYTES_38
14.8
MONOCYTES_39
14.6
MONOCYTES_40
14.2
MONOCYTES_41
14.2
MONOCYTES_42
14.1
MONOCYTES_43
14.0
MONOCYTES_44
13.8
MONOCYTES_45
13.7
MONOCYTES_46
13.7
MONOCYTES_47
13.4
MONOCYTES_48
13.3
MONOCYTES_49
13.3
MONOCYTES_50
13.2
MONOCYTES_51
13.0
MONOCYTES_52
12.9
MONOCYTES_53
12.7
MONOCYTES_54
12.3
MONOCYTES_55
12.2
MONOCYTES_56
12.2
MONOCYTES_57
12.2
MONOCYTES_58
12.2
MONOCYTES_59
12.0
MONOCYTES_60
11.9
MONOCYTES_61
11.8
MONOCYTES_62
11.8
MONOCYTES_63
11.6
MONOCYTES_64
11.6
MONOCYTES_65
11.5
MONOCYTES_66
11.3
MONOCYTES_67
11.1
MONOCYTES_68
10.9
MONOCYTES_69
10.9
MONOCYTES_70
10.7
MONOCYTES_71
10.6
MONOCYTES_72
10.5
MONOCYTES_73
10.3
MONOCYTES_74
10.2
MONOCYTES_75
10.0
MONOCYTES_76
10.0
MONOCYTES_77
10.0
MONOCYTES_78
9.9
MONOCYTES_79
9.3
MONOCYTES_80
9.1
MONOCYTES_81
8.6
MONOCYTES_82
8.5
MONOCYTES_83
8.3
MONOCYTES_84
8.0
MONOCYTES_85
7.9
MONOCYTES_86
7.8
MONOCYTES_87
7.7
MONOCYTES_88
7.2
MONOCYTES_89
7.1
MONOCYTES_90
7.0
MONOCYTES_91
6.5
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Non-classical monocyte TPM: 9.7
Samples: 90
Max TPM: 19.8
Min TPM: 3.0
M2_1
19.8
M2_2
18.2
M2_3
16.3
M2_4
16.1
M2_5
15.8
M2_6
15.5
M2_7
15.4
M2_8
15.1
M2_9
15.1
M2_10
15.0
M2_11
14.8
M2_12
14.2
M2_13
14.0
M2_14
13.8
M2_15
13.6
M2_16
13.5
M2_17
13.4
M2_18
12.9
M2_19
12.7
M2_20
12.5
M2_21
12.5
M2_22
12.3
M2_23
12.2
M2_24
12.1
M2_25
11.9
M2_26
11.8
M2_27
11.7
M2_28
11.5
M2_29
11.2
M2_30
11.2
M2_31
11.1
M2_32
11.1
M2_33
11.0
M2_34
10.4
M2_35
10.4
M2_36
10.3
M2_37
10.1
M2_38
9.9
M2_39
9.8
M2_40
9.8
M2_41
9.7
M2_42
9.4
M2_43
9.4
M2_44
9.1
M2_45
9.1
M2_46
9.0
M2_47
9.0
M2_48
8.9
M2_49
8.9
M2_50
8.8
M2_51
8.8
M2_52
8.8
M2_53
8.8
M2_54
8.7
M2_55
8.7
M2_56
8.4
M2_57
8.3
M2_58
8.3
M2_59
8.3
M2_60
8.1
M2_61
8.1
M2_62
7.9
M2_63
7.9
M2_64
7.7
M2_65
7.3
M2_66
7.3
M2_67
7.3
M2_68
7.1
M2_69
7.1
M2_70
6.8
M2_71
6.3
M2_72
6.2
M2_73
6.2
M2_74
6.0
M2_75
6.0
M2_76
6.0
M2_77
5.8
M2_78
5.4
M2_79
5.2
M2_80
5.0
M2_81
5.0
M2_82
4.9
M2_83
4.8
M2_84
4.8
M2_85
4.3
M2_86
4.3
M2_87
4.3
M2_88
4.2
M2_89
4.1
M2_90
3.0
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