A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
24.8
nTPM
Monaco:
32.0
nTPM
Schmiedel:
94.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.8
HPA sample
nTPM
NK-cell nTPM: 24.8
Samples: 6
Max nTPM: 37.3
Min nTPM: 6.9
P10809_1013
6.9
P10809_1033
14.7
P10809_1052
25.0
P10809_1071
31.6
P10809_1093
37.3
P10809_1103
33.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.0
Monaco sample
nTPM
NK-cell nTPM: 32.0
Samples: 4
Max nTPM: 40.6
Min nTPM: 23.3
RHH5316_R3683
39.2
RHH5224_R3596
40.6
RHH5253_R3625
23.3
RHH5282_R3654
24.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
94.0
Schmiedel sample id
TPM
NK-cell TPM: 94.0
Samples: 90
Max TPM: 141.4
Min TPM: 47.9
NK_1
141.4
NK_2
136.3
NK_3
127.2
NK_4
125.7
NK_5
125.7
NK_6
123.3
NK_7
121.9
NK_8
121.7
NK_9
121.1
NK_10
119.4
NK_11
118.9
NK_12
118.3
NK_13
118.2
NK_14
117.5
NK_15
116.7
NK_16
116.7
NK_17
115.0
NK_18
114.8
NK_19
113.6
NK_20
113.2
NK_21
112.8
NK_22
106.6
NK_23
105.8
NK_24
105.0
NK_25
103.6
NK_26
103.2
NK_27
102.6
NK_28
102.1
NK_29
101.1
NK_30
101.1
NK_31
100.7
NK_32
100.5
NK_33
100.2
NK_34
99.8
NK_35
99.4
NK_36
98.4
NK_37
98.1
NK_38
98.1
NK_39
97.6
NK_40
97.5
NK_41
97.3
NK_42
96.6
NK_43
96.1
NK_44
96.1
NK_45
95.9
NK_46
95.8
NK_47
95.4
NK_48
95.4
NK_49
94.2
NK_50
94.0
NK_51
93.4
NK_52
91.1
NK_53
90.6
NK_54
90.5
NK_55
90.5
NK_56
90.4
NK_57
89.0
NK_58
88.6
NK_59
87.9
NK_60
85.1
NK_61
83.5
NK_62
83.2
NK_63
82.6
NK_64
81.6
NK_65
80.9
NK_66
80.8
NK_67
80.6
NK_68
80.4
NK_69
80.2
NK_70
79.9
NK_71
79.7
NK_72
79.2
NK_73
78.5
NK_74
76.1
NK_75
75.7
NK_76
74.9
NK_77
73.0
NK_78
72.4
NK_79
70.8
NK_80
70.3
NK_81
66.9
NK_82
66.5
NK_83
64.0
NK_84
61.0
NK_85
59.3
NK_86
57.4
NK_87
57.1
NK_88
51.8
NK_89
50.2
NK_90
47.9
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