A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.8
nTPM
Monaco:
38.6
nTPM
Schmiedel:
60.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.8
HPA sample
nTPM
Classical monocyte nTPM: 21.7
Samples: 6
Max nTPM: 35.7
Min nTPM: 11.4
P10809_1003
11.4
P10809_1020
19.9
P10809_1039
35.7
P10809_1058
21.4
P10809_1080
18.1
P10809_1107
23.9
Intermediate monocyte nTPM: 23.8
Samples: 6
Max nTPM: 38.0
Min nTPM: 15.5
P10809_1004
15.5
P10809_1023
24.4
P10809_1042
38.0
P10809_1061
23.7
P10809_1081
17.9
P10809_1108
23.1
Non-classical monocyte nTPM: 22.0
Samples: 5
Max nTPM: 31.0
Min nTPM: 12.3
P10809_1005
12.3
P10809_1053
31.0
P10809_1072
23.1
P10809_1082
15.9
P10809_1109
27.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.6
Monaco sample
nTPM
Classical monocyte nTPM: 38.7
Samples: 4
Max nTPM: 41.5
Min nTPM: 36.2
RHH5313_R3680
36.3
RHH5221_R3593
36.2
RHH5250_R3622
40.6
RHH5279_R3651
41.5
Intermediate monocyte nTPM: 30.6
Samples: 4
Max nTPM: 41.2
Min nTPM: 24.6
RHH5314_R3681
41.2
RHH5222_R3594
24.6
RHH5251_R3623
31.4
RHH5280_R3652
25.0
Non-classical monocyte nTPM: 29.3
Samples: 4
Max nTPM: 34.6
Min nTPM: 25.0
RHH5315_R3682
31.7
RHH5223_R3595
25.0
RHH5252_R3624
25.9
RHH5281_R3653
34.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.9
Schmiedel sample id
TPM
Classical monocyte TPM: 60.9
Samples: 91
Max TPM: 87.7
Min TPM: 37.7
MONOCYTES_1
87.7
MONOCYTES_2
85.2
MONOCYTES_3
82.4
MONOCYTES_4
76.9
MONOCYTES_5
76.3
MONOCYTES_6
74.8
MONOCYTES_7
73.8
MONOCYTES_8
72.8
MONOCYTES_9
72.7
MONOCYTES_10
72.5
MONOCYTES_11
72.0
MONOCYTES_12
72.0
MONOCYTES_13
71.9
MONOCYTES_14
71.3
MONOCYTES_15
71.2
MONOCYTES_16
71.0
MONOCYTES_17
70.7
MONOCYTES_18
70.5
MONOCYTES_19
69.6
MONOCYTES_20
69.1
MONOCYTES_21
68.0
MONOCYTES_22
67.6
MONOCYTES_23
67.2
MONOCYTES_24
67.2
MONOCYTES_25
67.0
MONOCYTES_26
67.0
MONOCYTES_27
66.6
MONOCYTES_28
66.2
MONOCYTES_29
65.8
MONOCYTES_30
65.7
MONOCYTES_31
65.3
MONOCYTES_32
65.2
MONOCYTES_33
64.9
MONOCYTES_34
64.7
MONOCYTES_35
64.7
MONOCYTES_36
64.5
MONOCYTES_37
63.9
MONOCYTES_38
63.1
MONOCYTES_39
62.8
MONOCYTES_40
62.5
MONOCYTES_41
62.5
MONOCYTES_42
62.5
MONOCYTES_43
62.2
MONOCYTES_44
62.2
MONOCYTES_45
62.1
MONOCYTES_46
62.1
MONOCYTES_47
61.9
MONOCYTES_48
61.9
MONOCYTES_49
61.7
MONOCYTES_50
61.5
MONOCYTES_51
61.0
MONOCYTES_52
60.5
MONOCYTES_53
60.3
MONOCYTES_54
60.2
MONOCYTES_55
59.3
MONOCYTES_56
58.2
MONOCYTES_57
57.4
MONOCYTES_58
57.3
MONOCYTES_59
57.0
MONOCYTES_60
56.5
MONOCYTES_61
56.2
MONOCYTES_62
55.7
MONOCYTES_63
55.5
MONOCYTES_64
55.3
MONOCYTES_65
54.8
MONOCYTES_66
54.8
MONOCYTES_67
54.7
MONOCYTES_68
53.7
MONOCYTES_69
53.6
MONOCYTES_70
53.2
MONOCYTES_71
52.7
MONOCYTES_72
52.2
MONOCYTES_73
52.1
MONOCYTES_74
51.2
MONOCYTES_75
51.1
MONOCYTES_76
50.0
MONOCYTES_77
49.1
MONOCYTES_78
48.8
MONOCYTES_79
48.7
MONOCYTES_80
48.7
MONOCYTES_81
47.2
MONOCYTES_82
47.0
MONOCYTES_83
46.7
MONOCYTES_84
46.2
MONOCYTES_85
44.5
MONOCYTES_86
43.9
MONOCYTES_87
43.7
MONOCYTES_88
43.0
MONOCYTES_89
42.4
MONOCYTES_90
41.4
MONOCYTES_91
37.7
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Non-classical monocyte TPM: 41.0
Samples: 90
Max TPM: 56.3
Min TPM: 20.1
M2_1
56.3
M2_2
54.5
M2_3
54.1
M2_4
52.7
M2_5
52.4
M2_6
51.2
M2_7
50.8
M2_8
50.3
M2_9
50.2
M2_10
49.6
M2_11
49.5
M2_12
49.2
M2_13
49.0
M2_14
49.0
M2_15
48.7
M2_16
48.5
M2_17
48.1
M2_18
47.9
M2_19
47.8
M2_20
47.7
M2_21
47.7
M2_22
47.5
M2_23
47.4
M2_24
46.9
M2_25
46.9
M2_26
46.3
M2_27
45.9
M2_28
45.8
M2_29
45.7
M2_30
45.2
M2_31
44.8
M2_32
44.7
M2_33
44.6
M2_34
44.6
M2_35
44.6
M2_36
44.5
M2_37
44.3
M2_38
44.3
M2_39
43.9
M2_40
43.8
M2_41
43.4
M2_42
43.2
M2_43
43.0
M2_44
42.3
M2_45
42.3
M2_46
42.2
M2_47
41.5
M2_48
41.4
M2_49
41.2
M2_50
41.2
M2_51
41.2
M2_52
41.0
M2_53
40.7
M2_54
40.6
M2_55
40.3
M2_56
40.0
M2_57
40.0
M2_58
40.0
M2_59
39.5
M2_60
38.9
M2_61
38.9
M2_62
37.4
M2_63
37.1
M2_64
37.1
M2_65
36.3
M2_66
36.1
M2_67
36.1
M2_68
35.7
M2_69
35.3
M2_70
35.0
M2_71
34.8
M2_72
34.4
M2_73
34.2
M2_74
34.0
M2_75
33.8
M2_76
31.9
M2_77
30.2
M2_78
29.7
M2_79
29.4
M2_80
29.2
M2_81
28.9
M2_82
28.7
M2_83
27.9
M2_84
27.3
M2_85
26.5
M2_86
26.1
M2_87
26.0
M2_88
25.9
M2_89
21.9
M2_90
20.1
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