MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.5 nTPM
HPA Brain:57.0 nTPM
GTEx:13.5 nTPM
FANTOM5:96.3 Scaled Tags Per Million
Pig:82.1 nTPM
Mouse:69.6 nTPM
Allen mouse:2.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 57.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.8
1833 Male, age 53, unknown 64.2
1830 Male, age 51, unknown 62.7
1870 Female, age 42, unknown 61.9
2411 Female, age 72, unknown 61.0
2586 Male, age 75, left hemisphere 58.5
2019 Male, age 18, unknown 56.6
2219 Male, age 76, both hemispheres 54.5
1827 Male, age 72, unknown 53.0
2666 Male, age 74, left hemisphere 49.9
2828 Female, age 72, unknown 45.8
Dorsal raphe nucleus
nTPM: 49.1
2750 Male, age 76, both hemispheres 53.4
2047 Male, age 72, unknown 49.5
1828 Male, age 53, unknown 48.3
2016 Female, age 72, unknown 48.1
2298 Female, age 72, unknown 46.1
Inferior colliculus
nTPM: 54.2
1848 Female, age 42, unknown 56.2
2097 Female, age 72, unknown 55.7
2849 Male, age 72, unknown 54.2
1890 Male, age 53, unknown 50.8
Median raphe nucleus
nTPM: 53.8
2220 Male, age 76, midline 53.8
Periaquaductal grey, anterior
nTPM: 57.0
1947 Male, age 18, unknown 65.9
2502 Female, age 75, unknown 58.8
1795 Male, age 51, unknown 46.3
Periaquaductal grey, dorsal
nTPM: 48.7
1840 Male, age 53, unknown 53.0
2464 Female, age 72, unknown 50.4
2850 Male, age 76, both hemispheres 48.3
1831 Male, age 72, unknown 43.0
Periaquaductal grey, lateral
nTPM: 46.1
2053 Male, age 18, unknown 48.8
2272 Male, age 74, both hemispheres 45.3
2140 Male, age 76, both hemispheres 44.2
Pretectal area
nTPM: 51.8
2407 Male, age 75, both hemispheres 64.8
1944 Female, age 72, unknown 53.7
2316 Male, age 76, right hemisphere 53.4
2007 Male, age 72, unknown 52.5
1816 Male, age 51, unknown 51.8
2667 Female, age 75, unknown 50.6
2825 Male, age 18, unknown 50.6
2224 Female, age 72, unknown 49.4
1815 Male, age 53, unknown 49.2
1817 Female, age 42, unknown 48.7
2273 Male, age 74, both hemispheres 45.0
Red nucleus
nTPM: 55.4
2584 Male, age 75, left hemisphere 58.5
2227 Male, age 72, unknown 58.3
1904 Male, age 53, unknown 58.0
2588 Male, age 74, left hemisphere 57.5
2503 Female, age 72, unknown 57.3
1821 Female, age 72, unknown 57.2
1865 Male, age 51, unknown 57.2
1954 Female, age 42, unknown 55.6
2823 Male, age 76, right hemisphere 53.1
2769 Male, age 72, unknown 52.8
2785 Male, age 18, unknown 50.7
2725 Female, age 75, unknown 48.1
Substantia nigra
nTPM: 54.3
2241 Male, age 72, unknown 63.6
2583 Male, age 75, right hemisphere 61.0
1941 Male, age 53, unknown 56.3
1889 Female, age 72, unknown 55.9
1851 Male, age 51, unknown 55.4
2590 Female, age 75, unknown 54.1
1916 Female, age 42, unknown 52.8
2409 Female, age 72, unknown 52.2
2699 Male, age 18, unknown 47.2
2665 Male, age 74, both hemispheres 44.2
Superior colliculus
nTPM: 53.6
2668 Female, age 75, unknown 59.9
1913 Female, age 42, unknown 58.1
2664 Male, age 75, both hemispheres 57.8
2261 Male, age 18, unknown 54.8
1839 Male, age 51, unknown 53.9
1995 Male, age 72, unknown 52.7
2587 Male, age 74, left hemisphere 51.7
2087 Female, age 72, unknown 51.2
1895 Male, age 76, right hemisphere 50.7
1796 Male, age 53, unknown 44.7
Ventral tegmental area
nTPM: 52.6
2223 Female, age 72, unknown 55.1
1942 Male, age 51, unknown 53.6
2410 Female, age 72, unknown 52.7
2021 Male, age 53, unknown 52.5
1915 Female, age 42, unknown 51.0
2218 Male, age 76, both hemispheres 51.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.5
Samples: 183

Max nTPM: 22.5
Min nTPM: 8.0
Std nTPM: 2.8
Median nTPM: 13.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 22.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 20.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 20.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 20.6
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 20.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 20.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 20.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 19.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 19.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 19.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 19.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 96.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.3
FF:10158-103A5 76 years, female 96.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 82.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.9
Samples: 4

Max nTPM: 84.8
Min nTPM: 62.1
Sample A Female 77.7
Sample B Female 62.1
Sample C Male 75.1
Sample D Male 84.8
Midbrain
nTPM: 82.1
Samples: 4

Max nTPM: 119.0
Min nTPM: 65.9
Sample A Female 119.0
Sample B Female 75.1
Sample C Male 68.3
Sample D Male 65.9
Periaqueductal gray
nTPM: 67.8
Samples: 3

Max nTPM: 71.2
Min nTPM: 65.0
Sample B Female 71.2
Sample C Male 67.1
Sample D Male 65.0
Superior colliculi
nTPM: 74.8
Samples: 4

Max nTPM: 81.2
Min nTPM: 59.0
Sample A Female 79.0
Sample B Female 59.0
Sample C Male 79.9
Sample D Male 81.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 69.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.6
Samples: 4

Max nTPM: 76.2
Min nTPM: 62.3
Sample A Male 62.3
Sample B Male 71.0
Sample C Female 76.2
Sample D Female 68.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
68924859 Antisense, RP_050309_01_B07, Mouse strain C57BL/6J (56 days, male) 2.0

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