MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:344.1 nTPM
HPA Brain:918.4 nTPM
GTEx:344.1 nTPM
FANTOM5:1146.1 Scaled Tags Per Million
Pig:250.4 nTPM
Mouse:141.6 nTPM
Allen mouse:7.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 918.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 615.1
2019 Male, age 18, unknown 796.6
1830 Male, age 51, unknown 777.3
1833 Male, age 53, unknown 710.1
1870 Female, age 42, unknown 665.6
2411 Female, age 72, unknown 651.6
2828 Female, age 72, unknown 604.0
2666 Male, age 74, left hemisphere 601.0
2586 Male, age 75, left hemisphere 583.4
1827 Male, age 72, unknown 407.3
2219 Male, age 76, both hemispheres 354.2
Dorsal raphe nucleus
nTPM: 443.9
2750 Male, age 76, both hemispheres 851.9
2016 Female, age 72, unknown 404.7
1828 Male, age 53, unknown 395.9
2047 Male, age 72, unknown 311.0
2298 Female, age 72, unknown 256.2
Inferior colliculus
nTPM: 364.7
1890 Male, age 53, unknown 409.7
2849 Male, age 72, unknown 399.1
1848 Female, age 42, unknown 392.4
2097 Female, age 72, unknown 257.7
Median raphe nucleus
nTPM: 483.7
2220 Male, age 76, midline 483.7
Periaquaductal grey, anterior
nTPM: 358.4
2502 Female, age 75, unknown 455.1
1947 Male, age 18, unknown 323.2
1795 Male, age 51, unknown 296.9
Periaquaductal grey, dorsal
nTPM: 285.2
2464 Female, age 72, unknown 413.0
1831 Male, age 72, unknown 303.1
2850 Male, age 76, both hemispheres 221.9
1840 Male, age 53, unknown 202.8
Periaquaductal grey, lateral
nTPM: 306.8
2272 Male, age 74, both hemispheres 398.3
2053 Male, age 18, unknown 317.3
2140 Male, age 76, both hemispheres 204.7
Pretectal area
nTPM: 413.3
1815 Male, age 53, unknown 578.3
2007 Male, age 72, unknown 563.3
1817 Female, age 42, unknown 529.3
2316 Male, age 76, right hemisphere 490.2
2407 Male, age 75, both hemispheres 455.8
2825 Male, age 18, unknown 382.2
1944 Female, age 72, unknown 329.7
1816 Male, age 51, unknown 321.5
2667 Female, age 75, unknown 317.0
2273 Male, age 74, both hemispheres 296.7
2224 Female, age 72, unknown 282.4
Red nucleus
nTPM: 918.4
2823 Male, age 76, right hemisphere 1124.4
1865 Male, age 51, unknown 1045.1
1904 Male, age 53, unknown 1029.2
2785 Male, age 18, unknown 1006.4
2769 Male, age 72, unknown 966.6
2588 Male, age 74, left hemisphere 947.8
2503 Female, age 72, unknown 934.2
1821 Female, age 72, unknown 921.6
2227 Male, age 72, unknown 908.6
1954 Female, age 42, unknown 779.8
2584 Male, age 75, left hemisphere 697.3
2725 Female, age 75, unknown 660.1
Substantia nigra
nTPM: 469.9
2590 Female, age 75, unknown 598.9
1889 Female, age 72, unknown 570.7
2583 Male, age 75, right hemisphere 527.8
1851 Male, age 51, unknown 524.5
2409 Female, age 72, unknown 500.6
2699 Male, age 18, unknown 461.0
2665 Male, age 74, both hemispheres 429.6
1941 Male, age 53, unknown 380.5
1916 Female, age 42, unknown 367.0
2241 Male, age 72, unknown 338.9
Superior colliculus
nTPM: 488.6
1913 Female, age 42, unknown 672.6
1995 Male, age 72, unknown 669.4
2587 Male, age 74, left hemisphere 570.0
1839 Male, age 51, unknown 502.2
1895 Male, age 76, right hemisphere 500.8
2668 Female, age 75, unknown 492.1
1796 Male, age 53, unknown 407.2
2087 Female, age 72, unknown 369.2
2664 Male, age 75, both hemispheres 359.6
2261 Male, age 18, unknown 342.3
Ventral tegmental area
nTPM: 540.0
2223 Female, age 72, unknown 766.2
2410 Female, age 72, unknown 685.7
2218 Male, age 76, both hemispheres 501.7
2021 Male, age 53, unknown 460.4
1942 Male, age 51, unknown 429.8
1915 Female, age 42, unknown 396.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 344.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 344.1
Samples: 183

Max nTPM: 911.2
Min nTPM: 39.5
Std nTPM: 155.3
Median nTPM: 317.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 911.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 764.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 735.5
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 721.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 713.7
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 707.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 683.6
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 667.2
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 665.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 650.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 622.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1146.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1146.1
FF:10158-103A5 76 years, female 1146.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 250.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 224.8
Samples: 4

Max nTPM: 295.4
Min nTPM: 172.5
Sample A Female 250.1
Sample B Female 181.0
Sample C Male 172.5
Sample D Male 295.4
Midbrain
nTPM: 250.4
Samples: 4

Max nTPM: 573.5
Min nTPM: 110.0
Sample A Female 573.5
Sample B Female 193.7
Sample C Male 124.3
Sample D Male 110.0
Periaqueductal gray
nTPM: 145.3
Samples: 3

Max nTPM: 174.8
Min nTPM: 120.2
Sample B Female 174.8
Sample C Male 120.2
Sample D Male 141.0
Superior colliculi
nTPM: 202.3
Samples: 4

Max nTPM: 242.9
Min nTPM: 182.7
Sample A Female 242.9
Sample B Female 189.5
Sample C Male 182.7
Sample D Male 194.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 141.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 141.6
Samples: 4

Max nTPM: 142.9
Min nTPM: 140.3
Sample A Male 141.5
Sample B Male 142.9
Sample C Female 140.3
Sample D Female 141.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
70429303 Antisense, RP_050614_01_D08, Mouse strain C57BL/6J (56 days, male) 7.6

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