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  • STMN2
TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:202.8 nTPM
HPA Brain:172.9 nTPM
GTEx:202.8 nTPM
FANTOM5:439.8 Scaled Tags Per Million
Pig:382.9 nTPM
Mouse:483.5 nTPM
Allen mouse:19.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

172.9
Sample id Sample description nTPM
Amygdala
nTPM: 136.7
2814 Male, age 76, right hemisphere 258.6
1987 Female, age 91, left hemisphere 167.8
2517 Female, age 94, left hemisphere 108.6
2514 Male, age 75, right hemisphere 104.4
2695 Female, age 67, right hemisphere 44.0
Basal amygdala
nTPM: 139.6
2243 Female, age 91, right hemisphere 237.8
1955 Male, age 76, both hemispheres 168.9
2110 Male, age 80, left hemisphere 148.7
2685 Female, age 94, left hemisphere 140.2
2827 Female, age 67, right hemisphere 88.1
2609 Male, age 75, right hemisphere 54.1
Central amygdala
nTPM: 172.9
1905 Male, age 76, both hemispheres 228.7
2239 Male, age 80, left hemisphere 214.6
2701 Female, age 91, right hemisphere 190.9
2826 Female, age 94, left hemisphere 142.7
2515 Male, age 75, right hemisphere 87.4
Corticomedial amygdala
nTPM: 160.4
2242 Female, age 91, right hemisphere 249.1
2240 Male, age 76, both hemispheres 180.3
2429 Female, age 94, left hemisphere 172.5
2535 Female, age 67, right hemisphere 155.3
2829 Male, age 80, left hemisphere 145.6
2428 Male, age 75, right hemisphere 59.7
Lateral amygdala
nTPM: 136.7
1883 Male, age 76, both hemispheres 248.5
2534 Female, age 94, left hemisphere 209.4
2255 Female, age 91, right hemisphere 155.3
2256 Male, age 80, left hemisphere 102.4
2830 Female, age 67, right hemisphere 55.1
2516 Male, age 75, right hemisphere 49.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

202.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 202.8
Samples: 181

Max nTPM: 736.3
Min nTPM: 26.5
Std nTPM: 126.7
Median nTPM: 180.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 736.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 618.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 599.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 550.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 546.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 536.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 499.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 485.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 462.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 424.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 397.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 381.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 372.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 371.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 370.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 368.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 362.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 358.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 353.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 351.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 344.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 344.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 341.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 338.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 337.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 332.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 320.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 318.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 311.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 311.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 310.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 307.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 303.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 301.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 300.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 296.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 295.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 294.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 292.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 291.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 288.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 287.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 286.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 282.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 281.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 280.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 272.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 264.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 263.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 262.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 262.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 261.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 258.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 254.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 253.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 252.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 250.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 248.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 247.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 247.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 245.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 241.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 241.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 237.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 233.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 232.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 232.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 228.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 225.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 223.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 220.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 219.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 218.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 218.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 215.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 211.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 211.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 211.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 209.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 208.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 207.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 206.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 205.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 201.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 199.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 198.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 196.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 188.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 185.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 182.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 180.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 178.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 174.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 171.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 169.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 167.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 166.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 165.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 162.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 156.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 153.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 152.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 151.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 150.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 149.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 149.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 145.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 144.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 144.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 143.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 142.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 141.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 140.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 139.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 131.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 129.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 128.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 128.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 127.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 125.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 124.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 123.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 119.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 118.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 117.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 117.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 115.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 115.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 114.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 113.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 113.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 113.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 112.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 109.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 107.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 107.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 104.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 103.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 103.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 102.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 102.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 101.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 101.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 100.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 93.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 93.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 92.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 90.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 89.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 85.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 84.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 82.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 79.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 77.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 76.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 76.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 75.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 74.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 73.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 71.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 67.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 66.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 62.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 62.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 60.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 58.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 55.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 52.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 51.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 49.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 47.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 46.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 46.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 44.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 44.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 44.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 37.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 36.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 33.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 30.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 26.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

439.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 439.8
FF:10151-102I7 76 years, female 439.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

382.9
Pig sample Sample description nTPM
Amygdala
nTPM: 382.9
Samples: 4

Max nTPM: 609.6
Min nTPM: 250.4
Sample A Female 609.6
Sample B Female 250.4
Sample C Male 323.4
Sample D Male 348.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

483.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 483.5
Samples: 4

Max nTPM: 500.1
Min nTPM: 454.8
Sample A Male 496.6
Sample B Male 482.4
Sample C Female 454.8
Sample D Female 500.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.4
74819695 Antisense, RP_060315_02_H11, Mouse strain C57BL/6J (56 days, male) 20.4
69173415 Antisense, RP_050329_01_E10, Mouse strain C57BL/6J (56 days, male) 18.4

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