MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:195.5 nTPM
HPA Brain:163.0 nTPM
GTEx:195.5 nTPM
FANTOM5:115.3 Scaled Tags Per Million
Pig:105.7 nTPM
Mouse:132.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 163.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 147.5
2586 Male, age 75, left hemisphere 182.9
2666 Male, age 74, left hemisphere 168.8
2019 Male, age 18, unknown 158.9
1870 Female, age 42, unknown 152.8
2828 Female, age 72, unknown 151.0
1827 Male, age 72, unknown 150.1
2411 Female, age 72, unknown 150.1
1833 Male, age 53, unknown 125.2
1830 Male, age 51, unknown 123.7
2219 Male, age 76, both hemispheres 111.5
Dorsal raphe nucleus
nTPM: 159.1
2016 Female, age 72, unknown 192.1
2298 Female, age 72, unknown 169.9
2047 Male, age 72, unknown 151.5
1828 Male, age 53, unknown 144.6
2750 Male, age 76, both hemispheres 137.7
Inferior colliculus
nTPM: 140.8
1890 Male, age 53, unknown 156.9
2097 Female, age 72, unknown 155.6
1848 Female, age 42, unknown 134.9
2849 Male, age 72, unknown 115.9
Median raphe nucleus
nTPM: 128.6
2220 Male, age 76, midline 128.6
Periaquaductal grey, anterior
nTPM: 155.3
2502 Female, age 75, unknown 165.0
1947 Male, age 18, unknown 158.6
1795 Male, age 51, unknown 142.1
Periaquaductal grey, dorsal
nTPM: 153.7
2850 Male, age 76, both hemispheres 176.8
1840 Male, age 53, unknown 159.0
2464 Female, age 72, unknown 143.6
1831 Male, age 72, unknown 135.2
Periaquaductal grey, lateral
nTPM: 137.6
2140 Male, age 76, both hemispheres 159.0
2053 Male, age 18, unknown 146.5
2272 Male, age 74, both hemispheres 107.1
Pretectal area
nTPM: 157.1
1816 Male, age 51, unknown 190.8
2007 Male, age 72, unknown 189.9
1815 Male, age 53, unknown 181.8
1817 Female, age 42, unknown 176.1
1944 Female, age 72, unknown 169.7
2316 Male, age 76, right hemisphere 159.5
2224 Female, age 72, unknown 144.0
2273 Male, age 74, both hemispheres 132.8
2825 Male, age 18, unknown 131.5
2667 Female, age 75, unknown 126.4
2407 Male, age 75, both hemispheres 125.6
Red nucleus
nTPM: 147.5
1821 Female, age 72, unknown 179.2
2503 Female, age 72, unknown 171.4
1865 Male, age 51, unknown 153.0
2725 Female, age 75, unknown 151.2
1904 Male, age 53, unknown 150.1
2785 Male, age 18, unknown 148.8
2588 Male, age 74, left hemisphere 144.6
2584 Male, age 75, left hemisphere 142.7
1954 Female, age 42, unknown 138.1
2769 Male, age 72, unknown 136.8
2227 Male, age 72, unknown 133.7
2823 Male, age 76, right hemisphere 120.4
Substantia nigra
nTPM: 163.0
2241 Male, age 72, unknown 187.0
1851 Male, age 51, unknown 183.7
1916 Female, age 42, unknown 167.2
2590 Female, age 75, unknown 165.7
1889 Female, age 72, unknown 164.1
2583 Male, age 75, right hemisphere 161.8
2699 Male, age 18, unknown 155.0
1941 Male, age 53, unknown 151.7
2665 Male, age 74, both hemispheres 147.8
2409 Female, age 72, unknown 145.9
Superior colliculus
nTPM: 151.8
1995 Male, age 72, unknown 174.6
2668 Female, age 75, unknown 165.7
1913 Female, age 42, unknown 162.5
2664 Male, age 75, both hemispheres 153.8
2087 Female, age 72, unknown 153.5
2261 Male, age 18, unknown 153.1
2587 Male, age 74, left hemisphere 150.5
1796 Male, age 53, unknown 146.7
1839 Male, age 51, unknown 133.1
1895 Male, age 76, right hemisphere 124.1
Ventral tegmental area
nTPM: 148.9
1915 Female, age 42, unknown 161.0
2410 Female, age 72, unknown 159.5
1942 Male, age 51, unknown 149.7
2021 Male, age 53, unknown 149.1
2223 Female, age 72, unknown 143.1
2218 Male, age 76, both hemispheres 130.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 195.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 195.5
Samples: 183

Max nTPM: 332.8
Min nTPM: 89.1
Std nTPM: 46.1
Median nTPM: 186.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 332.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 332.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 317.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 311.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 300.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 293.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 293.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 291.4
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 286.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 286.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 285.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 115.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.3
FF:10158-103A5 76 years, female 115.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 105.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 93.5
Samples: 4

Max nTPM: 114.9
Min nTPM: 78.3
Sample A Female 114.9
Sample B Female 78.3
Sample C Male 91.2
Sample D Male 89.6
Midbrain
nTPM: 105.7
Samples: 4

Max nTPM: 125.3
Min nTPM: 92.5
Sample A Female 125.3
Sample B Female 94.7
Sample C Male 110.2
Sample D Male 92.5
Periaqueductal gray
nTPM: 81.9
Samples: 3

Max nTPM: 84.7
Min nTPM: 76.7
Sample B Female 84.3
Sample C Male 84.7
Sample D Male 76.7
Superior colliculi
nTPM: 96.1
Samples: 4

Max nTPM: 110.3
Min nTPM: 74.2
Sample A Female 110.3
Sample B Female 74.2
Sample C Male 107.3
Sample D Male 92.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 132.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 132.7
Samples: 4

Max nTPM: 134.3
Min nTPM: 131.3
Sample A Male 131.3
Sample B Male 134.3
Sample C Female 133.8
Sample D Female 131.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo