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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.9
Sample id
Sample description
nTPM
Amygdala nTPM: 35.9
2814
Male, age 76, right hemisphere
39.2
2695
Female, age 67, right hemisphere
38.1
1987
Female, age 91, left hemisphere
36.0
2517
Female, age 94, left hemisphere
33.6
2514
Male, age 75, right hemisphere
32.9
Basal amygdala nTPM: 28.5
2609
Male, age 75, right hemisphere
38.2
2110
Male, age 80, left hemisphere
30.7
2243
Female, age 91, right hemisphere
29.5
1955
Male, age 76, both hemispheres
27.1
2685
Female, age 94, left hemisphere
26.9
2827
Female, age 67, right hemisphere
18.9
Central amygdala nTPM: 34.0
1905
Male, age 76, both hemispheres
38.0
2826
Female, age 94, left hemisphere
37.4
2515
Male, age 75, right hemisphere
34.5
2239
Male, age 80, left hemisphere
32.0
2701
Female, age 91, right hemisphere
28.3
Corticomedial amygdala nTPM: 27.9
2428
Male, age 75, right hemisphere
34.1
2829
Male, age 80, left hemisphere
31.4
2242
Female, age 91, right hemisphere
28.6
2429
Female, age 94, left hemisphere
26.6
2240
Male, age 76, both hemispheres
26.4
2535
Female, age 67, right hemisphere
20.1
Lateral amygdala nTPM: 31.1
2516
Male, age 75, right hemisphere
38.7
2534
Female, age 94, left hemisphere
36.0
1883
Male, age 76, both hemispheres
34.4
2255
Female, age 91, right hemisphere
28.9
2256
Male, age 80, left hemisphere
25.7
2830
Female, age 67, right hemisphere
23.2
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
121.7
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 121.7
Samples: 181
Max nTPM: 231.2
Min nTPM: 61.8
Std nTPM: 29.3
Median nTPM: 119.4
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
231.2
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
229.5
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
205.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
200.6
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
197.2
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
196.3
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
194.5
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
186.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
184.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
177.9
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
176.9
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
172.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
167.4
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
166.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
161.3
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
161.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
158.6
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
157.9
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
157.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
154.0
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
153.8
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
152.6
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
150.7
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
148.2
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
147.4
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
146.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
145.6
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
145.1
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
144.5
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
144.1
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
143.9
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
143.0
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
142.4
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
142.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
141.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
140.9
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
140.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
140.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
140.4
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
139.4
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
139.4
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
138.2
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
137.2
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
136.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
136.5
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
136.2
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
136.1
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
136.0
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
135.8
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
135.4
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
135.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
134.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
132.5
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
132.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
131.9
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
129.1
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
129.0
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
128.8
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
127.8
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
127.8
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
127.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
127.6
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
127.2
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
127.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
126.8
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
126.7
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
125.7
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
125.6
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
125.5
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
125.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
125.2
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
124.7
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
124.7
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
124.3
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
124.1
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
123.9
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
123.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
123.1
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
122.4
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
122.3
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
122.1
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
122.0
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
121.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
121.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
121.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
120.8
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
120.4
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
120.3
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
120.1
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
120.0
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
119.4
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
119.3
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
118.5
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
118.2
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
118.1
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
118.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
117.5
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
116.6
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
116.4
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
116.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
115.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
115.4
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
114.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
114.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
114.4
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
113.7
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
113.7
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
112.6
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
111.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
111.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
110.8
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
110.8
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
109.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
109.8
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
109.5
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
108.9
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
108.5
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
108.3
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
107.9
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
107.6
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
107.1
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
106.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
106.9
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
106.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
106.4
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
106.3
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
106.1
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
106.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
106.0
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
105.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
105.2
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
104.9
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
103.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
103.6
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
103.6
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
102.9
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
102.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
101.4
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
101.3
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
100.9
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
100.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
100.4
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
100.4
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
99.2
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
99.1
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
97.9
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
97.4
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
96.9
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
96.2
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
96.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
96.0
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
94.6
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
94.5
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
93.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
93.1
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
92.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
92.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
92.5
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
92.3
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
91.1
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
89.5
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
89.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
88.5
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
87.9
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
87.8
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
86.0
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
85.4
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
85.2
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
84.4
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
83.1
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
82.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
82.2
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
79.5
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
78.0
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
76.6
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
74.6
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
73.2
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
71.1
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
69.9
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
68.7
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
61.8
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
16.1
Pig sample
Sample description
nTPM
Amygdala nTPM: 16.1
Samples: 4
Max nTPM: 19.0
Min nTPM: 12.6
Sample A
Female
19.0
Sample B
Female
15.7
Sample C
Male
17.1
Sample D
Male
12.6
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
64.9
Mouse sample
Sample description
nTPM
Amygdala nTPM: 64.9
Samples: 4
Max nTPM: 69.7
Min nTPM: 61.5
Sample A
Male
62.5
Sample B
Male
69.7
Sample C
Female
65.9
Sample D
Female
61.5
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
