MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:98.3 nTPM
HPA Brain:170.9 nTPM
GTEx:98.3 nTPM
FANTOM5:106.0 Scaled Tags Per Million
Pig:136.7 nTPM
Mouse:42.6 nTPM
Allen mouse:8.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 170.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 150.3
2586 Male, age 75, left hemisphere 218.4
2666 Male, age 74, left hemisphere 191.8
2828 Female, age 72, unknown 159.6
2219 Male, age 76, both hemispheres 151.7
1827 Male, age 72, unknown 143.6
1870 Female, age 42, unknown 139.5
1833 Male, age 53, unknown 134.6
2019 Male, age 18, unknown 125.9
2411 Female, age 72, unknown 120.2
1830 Male, age 51, unknown 117.7
Dorsal raphe nucleus
nTPM: 136.4
2047 Male, age 72, unknown 154.7
2750 Male, age 76, both hemispheres 142.4
1828 Male, age 53, unknown 137.0
2298 Female, age 72, unknown 133.5
2016 Female, age 72, unknown 114.3
Inferior colliculus
nTPM: 121.8
2849 Male, age 72, unknown 137.6
1848 Female, age 42, unknown 125.9
1890 Male, age 53, unknown 119.1
2097 Female, age 72, unknown 104.8
Median raphe nucleus
nTPM: 170.9
2220 Male, age 76, midline 170.9
Periaquaductal grey, anterior
nTPM: 145.1
1947 Male, age 18, unknown 165.6
1795 Male, age 51, unknown 152.1
2502 Female, age 75, unknown 117.5
Periaquaductal grey, dorsal
nTPM: 117.6
1840 Male, age 53, unknown 128.6
1831 Male, age 72, unknown 121.0
2850 Male, age 76, both hemispheres 120.1
2464 Female, age 72, unknown 100.6
Periaquaductal grey, lateral
nTPM: 106.1
2053 Male, age 18, unknown 116.9
2272 Male, age 74, both hemispheres 105.5
2140 Male, age 76, both hemispheres 95.8
Pretectal area
nTPM: 147.3
1816 Male, age 51, unknown 191.0
1944 Female, age 72, unknown 182.7
1817 Female, age 42, unknown 181.6
2007 Male, age 72, unknown 166.2
2667 Female, age 75, unknown 165.4
1815 Male, age 53, unknown 159.6
2407 Male, age 75, both hemispheres 135.5
2825 Male, age 18, unknown 131.4
2224 Female, age 72, unknown 118.5
2316 Male, age 76, right hemisphere 97.0
2273 Male, age 74, both hemispheres 92.0
Red nucleus
nTPM: 132.4
2584 Male, age 75, left hemisphere 179.1
2588 Male, age 74, left hemisphere 144.5
2725 Female, age 75, unknown 139.5
1821 Female, age 72, unknown 136.9
1904 Male, age 53, unknown 128.7
2785 Male, age 18, unknown 127.7
1954 Female, age 42, unknown 127.2
1865 Male, age 51, unknown 122.8
2227 Male, age 72, unknown 121.8
2769 Male, age 72, unknown 121.4
2503 Female, age 72, unknown 120.9
2823 Male, age 76, right hemisphere 118.8
Substantia nigra
nTPM: 147.1
2665 Male, age 74, both hemispheres 192.6
1916 Female, age 42, unknown 184.7
1889 Female, age 72, unknown 161.7
1851 Male, age 51, unknown 158.3
2583 Male, age 75, right hemisphere 153.3
1941 Male, age 53, unknown 143.6
2699 Male, age 18, unknown 142.7
2241 Male, age 72, unknown 132.4
2590 Female, age 75, unknown 114.5
2409 Female, age 72, unknown 86.8
Superior colliculus
nTPM: 144.9
2668 Female, age 75, unknown 180.1
2664 Male, age 75, both hemispheres 175.7
2087 Female, age 72, unknown 158.9
1796 Male, age 53, unknown 151.2
2261 Male, age 18, unknown 149.4
1913 Female, age 42, unknown 133.1
2587 Male, age 74, left hemisphere 128.9
1839 Male, age 51, unknown 125.6
1895 Male, age 76, right hemisphere 125.4
1995 Male, age 72, unknown 121.0
Ventral tegmental area
nTPM: 138.6
2218 Male, age 76, both hemispheres 158.7
1915 Female, age 42, unknown 149.6
2223 Female, age 72, unknown 137.3
1942 Male, age 51, unknown 136.3
2410 Female, age 72, unknown 128.6
2021 Male, age 53, unknown 121.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 98.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 98.3
Samples: 183

Max nTPM: 176.5
Min nTPM: 30.4
Std nTPM: 24.6
Median nTPM: 96.1
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 176.5
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 170.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 155.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 155.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 153.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 151.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 151.6
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 149.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 145.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 140.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 139.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 106.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 106.0
FF:10158-103A5 76 years, female 106.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 136.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 125.8
Samples: 4

Max nTPM: 142.3
Min nTPM: 94.0
Sample A Female 140.5
Sample B Female 94.0
Sample C Male 142.3
Sample D Male 126.2
Midbrain
nTPM: 136.7
Samples: 4

Max nTPM: 170.7
Min nTPM: 101.3
Sample A Female 156.5
Sample B Female 101.3
Sample C Male 170.7
Sample D Male 118.2
Periaqueductal gray
nTPM: 96.2
Samples: 3

Max nTPM: 105.7
Min nTPM: 88.9
Sample B Female 93.9
Sample C Male 105.7
Sample D Male 88.9
Superior colliculi
nTPM: 134.4
Samples: 4

Max nTPM: 158.4
Min nTPM: 101.1
Sample A Female 142.4
Sample B Female 101.1
Sample C Male 158.4
Sample D Male 135.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 42.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.6
Samples: 4

Max nTPM: 45.2
Min nTPM: 40.0
Sample A Male 40.0
Sample B Male 42.2
Sample C Female 45.2
Sample D Female 43.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.6
71608394 Antisense, RP_050927_01_F11, Mouse strain C57BL/6J (56 days, male) 11.8
544901 Antisense, RP_040617_02_G04, Mouse strain C57BL/6J (56 days, male) 5.5

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